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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5aa5D_

Fold library idPDB HeaderMoleculeTitle
c5aa5D_2.497PDB header: oxidoreductaseChain: D: PDB Molecule: nife-hydrogenase small subunit, hofk;


Added to library: Sat Jan 23 15:24:27 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AVPYGRKTQHTPALKEVHILWITAGLGCDGDSVSITAASQPSVEDVVLGAIPGLPKVHLHNPVLAYENGD
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Known secondary structure (DSSP)


TTGGG



SSS

SBS
STT

TT
TT
STTS

TTT
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EFMAPFHKAARGEIDNFVLVLEGSIPNERINGEGYWAAMGTDPQTHQPITIPEWLDRLAPKALAVVGAGT
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Known secondary structure (DSSP) ST

SS
SBB


TT

SS
SSB



SSSS


BGGG
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence CATYGGIHAMEGNPTGCMGLADYLGWQWKSRAGLPIVNVPGCPVQPDNFMETLLYLLYQLAGLAPMIPLD
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Known secondary structure (DSSP)
GGGG
TT
SS

B

TT
B
TTS
B


TT

TSS
S

B
 .........220.........230.........240.........250.........260.........270.........280
Sequence EALRPKWLFTRTVHDGCDRAGSYEQAIFATEYGNPNCIVKLGCWGPVVQCNVPKRGWIAGVGGCPNVGGI
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Known secondary structure (DSSP) TT

BSS
SGGG
TTTT
B
SSTT
SSB
GGGT

GGG




SSTT


SGGGT

 .........290.........300.........310.........320.........330.........340.....
Sequence CIGCTMPGFPDKFMPFMDAPPGAVLSSNLIKSYGPLIRSLRKLTKDTLNDEPKWRHNQPVLTTGY
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Known secondary structure (DSSP)


TTSTTTTTTT
STTS

S


TTTS

TT
S

SS

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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