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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5a9qZ_

Fold library idPDB HeaderMoleculeTitle
c5a9qZ_PDB header: transport proteinChain: Z: PDB Molecule: nuclear pore complex protein nup85;PDBTitle: human nuclear pore complex


Added to library: Sat Oct 3 08:20:47 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TVTLIPGVNSKKNQMYFDWGPGEMLVCETSFNKSCPFIYIIRKDVDVYSQILRKLFNESHGIFLGLQRID
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Known secondary structure (DSSP)
B

B


TTSBS
S




B
B


BSS



STBBTBTTTSBTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence EELTQLVRVSKNYRSVIRACMEEMHQVAIAAKDPANGRQFSSQVSILSAMELIWNLCEILFIEVAPAGPL
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Known secondary structure (DSSP)


TBSBTTTB
TTBSBS
S
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LLHLLDWVRLHVCEVDSLSADVLGSENPSKHDSFWNLVTILVLQGRLDEARQMLSKEADASPASAGICRI
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Known secondary structure (DSSP) TTTGGGGTTT
TTB
TTTBBTTBTT

TTTTTBTTBTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence MGDLMRTMPILSELKWQHWHEECERYLQDSTFATSPHLESLLKIMLGDEAALLEQKSNWYHFLVTRLLYS
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Known secondary structure (DSSP) TBTT
GGGTTTTTSBTT


B
 .........290.........300.........310.........320.........330.........340.........350
Sequence NPTVIDLHYYAQSSLDLFGESSPEPLDNILLAAFEFDIHQVIKECSIANWWFVAHLTDLLDHCKLLQSHN
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Known secondary structure (DSSP) S

ST
TTTT

TBBBBTS




 .........360.........370.........380.........390.........400.........410.........420
Sequence LYFGSNMREFLLLEYASGLFAHPSLWQLGVDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQ
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Known secondary structure (DSSP)
SSS

TTBTTB

BTTTSTTBBTSSS

SSTB



TS
 .........430....
Sequence MTEQVRSICKILAM
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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