PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5a9qS_

Fold library id	PDB Header	Molecule	Title
c5a9qS_	PDB header: transport protein	Chain: S: PDB Molecule: nuclear pore complex protein nup160;	PDBTitle: human nuclear pore complex

Links to external resources
Added to library: Sat Oct 3 08:25:17 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L E R S F V E L S G A E R E R P R H F R E F T V C S I G T A N A V A G A V K Y S E S A G G F Y Y V E S V T R N R F I H W K T S G D L M E E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L D I N L L N N A I R L K F Q N S V L P G G V Y V S T Q N R V I I L M L T N Q T V H R L L L P P S R M Y R S E K V D F T D P C N Y Q L I P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
T T
S S S
S
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V P G I S P N S T A S T A W G E A L F A L P S G G I F V L K L P P Y P G M V S V V E L K Q S S V M Q R L L I R G D Q S P S D R P L S L A V H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
B
S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence C V D A F I F A L C Q D H K L R M W S Y K E Q M C L M V A D M L E Y V P V K G H K L R L A Y S P T M G L Y L G I Y M H A P K R G Q F C I F Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T T T
S S
S
T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L V S T N R Y S L D H I S S L F T S Q E T L I D F A L T S T D I W A L W H D A N Q T V V K Y I N F E H N V A G Q W N P V F M Q P E E E I V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S T T
T T T B

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence R D D Q D P R E M Y L Q S L F T P Q F T N E A L C K A L Q I F C R G T E R N L D L S W S E L K K E V T L A V E N E L Q G S V T E Y E F S Q E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T S
G G G G G S
B
S S S B

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence E F R N L Q Q E F W C K F Y A C C L Q Y Q E A L S H P L A L H L N P H T N M V C L L K K G Y L S F L I P S S L V D H L Y L L P Y E N L L T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T T T T S S
S S
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence D E T D D V D I R D V I C L I K C L R L I E E S V T V D M S V I M E M S C Y N L Q S P E K A A E Q I L E D M I T I D V E N V M E D I C S K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S
S S S S
T
T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence Q E I R N P I H A I G L L I R E M D Y E T R M N L T Q L Y G S N T A G Y I V C R G V H K I A S T R F L I C R D L L I L Q Q L L M R L G D A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S T
B
S
T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence I W G T G Q L L L H R T A P L L L S Y Y L I K W G S E C L A T D V P L A N R F V S S P Q T I V E L F F Q E V A R K H I L S Q T G L N W P E M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S
G G G T S
S S T
B
S S S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence I T A I T S Y L L Q L L W P S N P G C L F L E C L M G N C Q Y V Q L Q D Y I Q L L H P V G S C R F M L G R C Y L V T G E G Q K A L E C F C Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
T T T T S
T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence A A S E V G K E E F L D R L I R S E D G E I V S T P R L Q Y Y D K V L R L L D V I G L P E L V I Q L A T S A I T E A G D D W K S Q A T L R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S
G G G S
S T T T
S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence C I F K H H L D L G H N S Q A Y E A L T Q I P D S S R Q L D C L R Q L V V V L C E R S Q L Q D L V E F P Y V N L H N E V V G I I E S R A R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S S
S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence V D L M T H N Y Y E L L Y A F H I Y R H N Y R K A G T V M F E Y G M R L G R E V R T L R G L E K Q G N C Y L A A L N C L R L I R P E Y A W I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S T S
S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . .

Sequence V Q I E I L E L E D L E K E C S L A R I R L T L A Q H D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	E	R	S	F	V	E	L	S	G	A	E	R	E	R	P	R	H	F	R	E	F	T	V	C	S	I	G	T	A	N	A	V	A	G	A	V	K	Y	S	E	S	A	G	G	F	Y	Y	V	E	S	V	T	R	N	R	F	I	H	W	K	T	S	G	D	L	M	E	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S	S											S							S							S												S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	D	I	N	L	L	N	N	A	I	R	L	K	F	Q	N	S	V	L	P	G	G	V	Y	V	S	T	Q	N	R	V	I	I	L	M	L	T	N	Q	T	V	H	R	L	L	L	P	P	S	R	M	Y	R	S	E	K	V	D	F	T	D	P	C	N	Y	Q	L	I	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S														T	T							T	T								S	S	S																					S		S							T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	P	G	I	S	P	N	S	T	A	S	T	A	W	G	E	A	L	F	A	L	P	S	G	G	I	F	V	L	K	L	P	P	Y	P	G	M	V	S	V	V	E	L	K	Q	S	S	V	M	Q	R	L	L	I	R	G	D	Q	S	P	S	D	R	P	L	S	L	A	V	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	S																																															B					S	S				T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	C	V	D	A	F	I	F	A	L	C	Q	D	H	K	L	R	M	W	S	Y	K	E	Q	M	C	L	M	V	A	D	M	L	E	Y	V	P	V	K	G	H	K	L	R	L	A	Y	S	P	T	M	G	L	Y	L	G	I	Y	M	H	A	P	K	R	G	Q	F	C	I	F	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S							T	T	T	T																									S	S		S										T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	V	S	T	N	R	Y	S	L	D	H	I	S	S	L	F	T	S	Q	E	T	L	I	D	F	A	L	T	S	T	D	I	W	A	L	W	H	D	A	N	Q	T	V	V	K	Y	I	N	F	E	H	N	V	A	G	Q	W	N	P	V	F	M	Q	P	E	E	E	I	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	B			S									T	T																					T	T	T							B
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	R	D	D	Q	D	P	R	E	M	Y	L	Q	S	L	F	T	P	Q	F	T	N	E	A	L	C	K	A	L	Q	I	F	C	R	G	T	E	R	N	L	D	L	S	W	S	E	L	K	K	E	V	T	L	A	V	E	N	E	L	Q	G	S	V	T	E	Y	E	F	S	Q	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T																												T	S				G	G	G	G	G	S																					B		S	S	S	B
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	E	F	R	N	L	Q	Q	E	F	W	C	K	F	Y	A	C	C	L	Q	Y	Q	E	A	L	S	H	P	L	A	L	H	L	N	P	H	T	N	M	V	C	L	L	K	K	G	Y	L	S	F	L	I	P	S	S	L	V	D	H	L	Y	L	L	P	Y	E	N	L	L	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							G	G	G									T	T	T	T							S	S																S	S								S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	D	E	T	D	D	V	D	I	R	D	V	I	C	L	I	K	C	L	R	L	I	E	E	S	V	T	V	D	M	S	V	I	M	E	M	S	C	Y	N	L	Q	S	P	E	K	A	A	E	Q	I	L	E	D	M	I	T	I	D	V	E	N	V	M	E	D	I	C	S	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S					T	T																		S																S	S	S	S														T			T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	Q	E	I	R	N	P	I	H	A	I	G	L	L	I	R	E	M	D	Y	E	T	R	M	N	L	T	Q	L	Y	G	S	N	T	A	G	Y	I	V	C	R	G	V	H	K	I	A	S	T	R	F	L	I	C	R	D	L	L	I	L	Q	Q	L	L	M	R	L	G	D	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S													T							B			S																																					T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	I	W	G	T	G	Q	L	L	L	H	R	T	A	P	L	L	L	S	Y	Y	L	I	K	W	G	S	E	C	L	A	T	D	V	P	L	A	N	R	F	V	S	S	P	Q	T	I	V	E	L	F	F	Q	E	V	A	R	K	H	I	L	S	Q	T	G	L	N	W	P	E	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T																								T	S								G	G	G	T	S		S	S									T		B						S	S	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	I	T	A	I	T	S	Y	L	L	Q	L	L	W	P	S	N	P	G	C	L	F	L	E	C	L	M	G	N	C	Q	Y	V	Q	L	Q	D	Y	I	Q	L	L	H	P	V	G	S	C	R	F	M	L	G	R	C	Y	L	V	T	G	E	G	Q	K	A	L	E	C	F	C	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S	S														T	T								T	T	T	T	S																	T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	A	A	S	E	V	G	K	E	E	F	L	D	R	L	I	R	S	E	D	G	E	I	V	S	T	P	R	L	Q	Y	Y	D	K	V	L	R	L	L	D	V	I	G	L	P	E	L	V	I	Q	L	A	T	S	A	I	T	E	A	G	D	D	W	K	S	Q	A	T	L	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S					T	T			S		G	G	G										S		S	T														T	T																		S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	C	I	F	K	H	H	L	D	L	G	H	N	S	Q	A	Y	E	A	L	T	Q	I	P	D	S	S	R	Q	L	D	C	L	R	Q	L	V	V	V	L	C	E	R	S	Q	L	Q	D	L	V	E	F	P	Y	V	N	L	H	N	E	V	V	G	I	I	E	S	R	A	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T													S	S																												S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	V	D	L	M	T	H	N	Y	Y	E	L	L	Y	A	F	H	I	Y	R	H	N	Y	R	K	A	G	T	V	M	F	E	Y	G	M	R	L	G	R	E	V	R	T	L	R	G	L	E	K	Q	G	N	C	Y	L	A	A	L	N	C	L	R	L	I	R	P	E	Y	A	W	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			S															T	T																					S	T																			S		S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.
Sequence	V	Q	I	E	I	L	E	L	E	D	L	E	K	E	C	S	L	A	R	I	R	L	T	L	A	Q	H	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)