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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5a9qB_

Fold library idPDB HeaderMoleculeTitle
c5a9qB_PDB header: transport proteinChain: B: PDB Molecule: nuclear pore complex protein nup155;PDBTitle: human nuclear pore complex


Added to library: Sat Oct 3 08:28:21 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QEALENAGRLIDRQLQEDRMYPDLSELLMVSSGMDMDYPLQLLSVPNLPEISSIRRVPLPPELVEQFGHM
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Known secondary structure (DSSP)




S

GGGG











SSS

S

TTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence QCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATP
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Known secondary structure (DSSP) SS
TTTTTTSS
SS




S





SSSS
SSSS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence VDIVILGLSYANLSGGMQLLPDPLSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQKINHSKSSLSF
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Known secondary structure (DSSP) S










TTT

TTS
SSSS






SS
S

 .........220.........230.........240.........250.........260.........270.........280
Sequence LVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSASVSQNAIVSAAGNIARTID
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Known secondary structure (DSSP)





SS
SS

S
TTTTTTS
TT



SS

STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence RSVFKIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRARPNTLTLVHVRLPPGFSASSTVEKPSKVH
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Known secondary structure (DSSP) TTT





TTT
SS
SS




B

B






SSSTT

SS
SB
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence RALYSKGILLMAASENDNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAIDTPLNKDHIPITDSPV
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Known secondary structure (DSSP)
TTT




TTTTSSS

S

S










SSSTTSS
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence VVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVEIERFFKLHQEDQACATCLILACSTCDREVSAW
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Known secondary structure (DSSP) TTTTTTS



SS

TT








 .........500.........510.........520.........530.........540.........550.........560
Sequence ATRAFFRYGGEAQMRFTTLPVYSGKHNGICIYFSRIMGNIWDASLVVESSVPCQLLESVLQELKGLQEFL
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Known secondary structure (DSSP)
STTSS








SBSB

BSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence DRNSQFAGGEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIR
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Known secondary structure (DSSP) T


S


TTT
BT
 .........640.........650.........660.........670.........680.........690.........700
Sequence DKELTGALIASLINCYIRDNAAVDGISLHLQDICDAICSKANELLQRSRQVRESLKEYQKISNQVDLSNV
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Known secondary structure (DSSP)
STTS
T





ST
 .........710.........720.........730.........740.........750.........760.........770
Sequence CAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDVGLQAFQERLNSYKCITDTLQELVEAGH
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Known secondary structure (DSSP) TT
S
SST
SS





 .........780.........790.........800.........810.........820.........830.........840
Sequence HFEQMLKLSQRLFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKRYMDLLWRYYEKNRSFSNAARVL
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Known secondary structure (DSSP) SS



TT


TTT



S
 .........850.........860.........870.........880.........890.........900.........910
Sequence SRLADMHTEISLQQRLEYIARAILSAEFLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVSQLDSEL
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Known secondary structure (DSSP)





T


SSS
TTTT

 .........920.........930.........940.........950.........960.........970.........980
Sequence MDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLG
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Known secondary structure (DSSP)

TTTTTT
T




SST
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPKPLHLLDCIH
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Known secondary structure (DSSP) TTSTTT

SS


TTT






 .........1060.........1070.........1080.........1090.......
Sequence VLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVELQSMSSSVAVQA
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Known secondary structure (DSSP) S
TTT
SSTTTS

SSS

T
S


S





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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