Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5a9eE_

Fold library idPDB HeaderMoleculeTitle
c5a9eE_PDB header: viral proteinChain: E: PDB Molecule: deltambd gag protein;PDBTitle: cryo-electron tomography and subtomogram averaging of rous-2 sarcoma-virus deltambd virus-like particles


Added to library: Sat Aug 15 08:25:20 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AGQAPGPALTDWARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVE
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP)



SS




TSSGGG









SSSS



T
SSSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence ALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLNRLKGLAD
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TTS




TTSTTS
SSTTTS

T
ST
 .........150.........160.........170.........180.........190.........200.........210
Sequence GMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPWADIMQGPSESFVDFANRLIKAVEGSDLP
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TTTT


TTTT


S

GGGG



TTS
T

S
 .........220.........230.........240.........250.....
Sequence PSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ
Predicted secondary structure










SS confidence












































Known secondary structure (DSSP) S
S
TT

ST
-


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D