PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5a4pA_

Fold library id	PDB Header	Molecule	Title
c5a4pA_	PDB header: ligase	Chain: A: PDB Molecule: ubiquitin-conjugating enzyme e2 z;	PDBTitle: structure of ube2z provides functional insight into2 specificity in the fat10 conjugation machinery

Links to external resources
Added to library: Sat Nov 21 08:22:29 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence C L L R I K R D I M S I Y K E P P P G M F V V P D T V D M T K I H A L I T G P F D T P Y E G G F F L F V F R C P P D Y P I H P P R V K L M T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S
T T
T T S T T T T
T T T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T G N N T V R F N P N F Y R N G K V C L S I L G T W T G P A W S P A Q S I S S V L I S I Q S L M T E N P Y H N E P G F E Q E R H P G D S K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T T
B T T B
T T S B B
G G G T S S S S S
T T
S
S S G G G G S T T T T S
S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y N E C I R H E T I R V A V C D M M E G K C P C P E P L R G V M E K S F L E Y Y D F Y E V A C K D R L H L Q G Q T M Q D P F G E K R G H F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S
S T T G G G T T
B
T T
B

. . . . . . . . . 220 . . . . . . .

Sequence Y Q S L L M R L G L I R Q K V L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	C	L	L	R	I	K	R	D	I	M	S	I	Y	K	E	P	P	P	G	M	F	V	V	P	D	T	V	D	M	T	K	I	H	A	L	I	T	G	P	F	D	T	P	Y	E	G	G	F	F	L	F	V	F	R	C	P	P	D	Y	P	I	H	P	P	R	V	K	L	M	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S			T	T							S	S		T	T										T	T	S	T	T	T	T											T	T	T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	G	N	N	T	V	R	F	N	P	N	F	Y	R	N	G	K	V	C	L	S	I	L	G	T	W	T	G	P	A	W	S	P	A	Q	S	I	S	S	V	L	I	S	I	Q	S	L	M	T	E	N	P	Y	H	N	E	P	G	F	E	Q	E	R	H	P	G	D	S	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T	T	T				B	T	T	B		T	T	S	B	B			G	G	G	T	S	S	S	S	S				T	T														S		S	S	G	G	G	G	S	T	T	T	T	S		S	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	N	E	C	I	R	H	E	T	I	R	V	A	V	C	D	M	M	E	G	K	C	P	C	P	E	P	L	R	G	V	M	E	K	S	F	L	E	Y	Y	D	F	Y	E	V	A	C	K	D	R	L	H	L	Q	G	Q	T	M	Q	D	P	F	G	E	K	R	G	H	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T					T	T		S																	S										T	T	G	G	G	T	T		B				T	T						B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	Y	Q	S	L	L	M	R	L	G	L	I	R	Q	K	V	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)