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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5a31A_

Fold library idPDB HeaderMoleculeTitle
c5a31A_PDB header: cell cycleChain: A: PDB Molecule: anaphase-promoting complex subunit 1;PDBTitle: structure of the human apc-cdh1-hsl1-ubch10 complex.


Added to library: Sat Nov 21 08:29:42 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MIAARDLQEFVPFGRDHCKHHPNALNLQLRQLQPASEXXXXXXXXXXXKESWQLRKAVSEIGEDVDYDEE
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Known secondary structure (DSSP)

B





S




S








SS

S











TTT




 .........80.........90.........100.........110.........120.........130.........140
Sequence LYVAGNMVIWSKGSKSQALAVYKAFTVDSPVQQALWCDFIISEVEKCICILQSSCINMHSIEGKDYIASL
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Known secondary structure (DSSP) SSS

SSTTT




SS
BS




BSS
SSS



 .........150.........160.........170.........180.........190.........200.........210
Sequence PFQVANVWPTKYGLLFERSPLPTMFSMLHPLDEITPLVCKAQYVVDHAMKIVFLNTDPSIVMTYDAVQNV
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Known secondary structure (DSSP) SS


BTTB




SSSSS


B



B


TT
TTTTTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence HSVWTLRRVKAEEEXXXXXXXXXGGFXXXXPIVPELCIDHLWAAAQASKVFITSDLCGQKFLCFLVESQL
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Known secondary structure (DSSP)





S


SSTT







S







S

SSS
TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence QLRCVKFQESTALIFGSVTNIPAKDAAPVEKIDTMLVLEGSGNLVLYTGVVRVGKVFIPATYIHSIRDPV
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Known secondary structure (DSSP)




STTTTTTTSSSS
B




 .........360.........370.........380.........390.........400.........410.........420
Sequence HNRVTLELSNGSMVRITIPEIATSELVQTCLQAIKFILPKEIAVQMLVKWYNVHSAPGGASYHSEWNLFV
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Known secondary structure (DSSP) TTTTS



S

SS
S

STT

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence TCLMNMMGYTHIPAIFFVLHLVYEELKLNTLMGEGICSLVELLVQLARDLKLGPYVDHYYRDYPTLASEP
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Known secondary structure (DSSP) TT



SS
TTT


SS




 .........500.........510.........520.........530.........540.........550.........560
Sequence PSIYQWVSSCLKGEGAPPYPYLPGICERSRLVVLSIALYILSSLAERLVVWMTNVGFILRDLETLPFGIA
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Known secondary structure (DSSP)

S

S





TTTT

SS

TTGGGTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LPIRDAIYHCREQPASDWPEAVCLLIGRQDLSAADDGMNDMNHEVMSLIWSEDLRVQDVRRLLQSAHPVR
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Known secondary structure (DSSP) S

S


TT
GGGT



S
S


T
SS
S

SS
B
 .........640.........650.........660.........670.........680.........690.........700
Sequence VNVVQYPELSEHEFIEEKENRLLQLCQRTMALPVGRGMFTLFSYHPVPTEPLPIPKLNLTGRAPPRNTTV
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Known secondary structure (DSSP)





S
S
T
S
B


SSS








TTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence DLNSGNIDVPPNMTSWASFHNGVAAGLKIAPASQIDSAWIVYNKPKHAELANEYAGFLMALGLNGHLTKL
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Known secondary structure (DSSP) TTSSSS


SSTTTB
SSS


T


SSSSTGGGGS
 .........780.........790.........800.........810.........820.........830.........840
Sequence ATLNIHDYLTKGHEMTSIGLLLGVSAAKLGTMDMSITRLLSIHIPALLPPTSTELDVPHNVQVAAVVGIG
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Known secondary structure (DSSP)


TTS

STTTS
SS






 .........850.........860.........870.........880.........890.........900.........910
Sequence LVYQGTAHRHTAEVLLAEIGRPPGPEMEYATDRESYSLAAGLALGMVCLGHGSNLIGMSALNVPEQLYQY
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Known secondary structure (DSSP) TTT


T



STTTT
SSTT

S

TT
SSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence MVGGHSPSYQIKEGDTLNVDVTCPGATLALAMIYLKTNNRSIADWLRAPDTMYLLDFVKPEFLLLRTLAR
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Known secondary structure (DSSP)





SS



SS

TSS


TS


SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence CLILWDDILPNSKWVDSNVPQIIRENLNLETLSQAHVYIIAGACLSLGFRFAGSENLSAFNCLHKFAKDF
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Known secondary structure (DSSP) STTT


SS



STTT

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence MTYLSAPNASVTGPHNLETCLSVVLLSLAMVMAGSGNLKVLQLCRFLHMKTGGEMNYGFHLAHHMALGLL
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Known secondary structure (DSSP) SSTT
T
SS


SSS

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FLGGGRYSLSTSNSSIAALLCALYPHFPAHSTDNRYHLQALRHLYVLAAEPRLLVPVDVDTNTPCYALLE
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Known secondary structure (DSSP) TTTTTS

TTT
S


SSTT

SSS
GGGGGG



SSS
SB


 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence VLYKGTQWYEQTKEELMAPTLLPELHLLKQIKVKGPRYWELLIDLTQHLKSILSKDGVLYVKLRAGQLSY
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Known secondary structure (DSSP)
TTSS
SSS

S
TTT
SSSB



TT


B
TTS

T
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence KEDASEARAFKSAFTSDPALLSFAEYFCKPTVNMGQKQEILDLFSSVLYECVTQETPEMLPAYIAMDQAI
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Known secondary structure (DSSP) TT










S


TS

S

SSTTT
TT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence RRLGRREMSETSELWQIKLVLEFFSSRSHQFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSPLESQ
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Known secondary structure (DSSP) T




SSS





STTTT


 .........1410.........1420.........1430.........1440.
Sequence LSMLACFAVYHSVPAPXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) T




S
SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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