PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5a2fA_

Fold library id	PDB Header	Molecule	Title
c5a2fA_	PDB header: cell adhesion	Chain: A: PDB Molecule: cd166 antigen;	PDBTitle: two membrane distal igsf domains of cd166

Links to external resources
Added to library: Sat Jul 25 08:39:23 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence W Y T V N S A Y G D T I I I P C R L D V P Q N L M F G K W K Y E K P D G S P V F I A F R S S T K K S V Q Y D D V P E Y K D R L N L S E N Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
T T
T T
T T T
G G G T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L S I S N A R I S D E K R F V C M L V T E D N V F E A P T I V K V F K Q P S K P E I V S K A L F L E T E Q L K K L G D C I S E D S Y P D G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
G G G
S T T B
S
S B T S
B S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I T W Y R N G K V L H P L E G A V V I I F K K E M D P V T Q L Y T M T S T L E Y K T T K A D I Q M P F T C S V T Y Y G P S G Q K T I H S E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B T T T
T T T
B
G G G T T
T T

. . . . . . . .

Sequence A V F D I Y Y P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	W	Y	T	V	N	S	A	Y	G	D	T	I	I	I	P	C	R	L	D	V	P	Q	N	L	M	F	G	K	W	K	Y	E	K	P	D	G	S	P	V	F	I	A	F	R	S	S	T	K	K	S	V	Q	Y	D	D	V	P	E	Y	K	D	R	L	N	L	S	E	N	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S								S				T	T											T	T											T	T	T									G	G	G	T	T	T					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	S	I	S	N	A	R	I	S	D	E	K	R	F	V	C	M	L	V	T	E	D	N	V	F	E	A	P	T	I	V	K	V	F	K	Q	P	S	K	P	E	I	V	S	K	A	L	F	L	E	T	E	Q	L	K	K	L	G	D	C	I	S	E	D	S	Y	P	D	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S			G	G	G		S									T	T													B									S			S				B	T	S													B	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	T	W	Y	R	N	G	K	V	L	H	P	L	E	G	A	V	V	I	I	F	K	K	E	M	D	P	V	T	Q	L	Y	T	M	T	S	T	L	E	Y	K	T	T	K	A	D	I	Q	M	P	F	T	C	S	V	T	Y	Y	G	P	S	G	Q	K	T	I	H	S	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T						B	T	T	T											T	T	T													B		G	G	G	T	T												T	T
	.	.	.	.	.	.	.	.
Sequence	A	V	F	D	I	Y	Y	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B