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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5a20B_

Fold library idPDB HeaderMoleculeTitle
c5a20B_PDB header: viral proteinChain: B: PDB Molecule: portal protein;PDBTitle: structure of bacteriophage spp1 head-to-tail interface2 filled with dna and tape measure protein


Added to library: Sat Jun 6 08:22:36 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKTNNRTSHAWHKLFVDQKTQ
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Known secondary structure (DSSP)

S
S


S

SS


SS







 .........80.........90.........100.........110.........120.........130.........140
Sequence YLVGEPVTFTSDNKTLLEYVNELADDDFDDILNETVKNMSNKGIEYWHPFVDEEGEFDYVIFPAEEMIVV
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Known secondary structure (DSSP)


S



SSTTTSS

SS



SS
S











 .........150.........160.........170.........180.........190.........200.........210
Sequence YKDNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIG
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Known secondary structure (DSSP)
SSS
SSS




B





SSSS


B
B
SSSB

TTTS

S
SS


SSSS

SSTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence WGRVPIIPFKNNEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENPKEFTANLRYHSV
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Known secondary structure (DSSP)
SS
S





SSS


S




S



S


 .........290.........300.........310.........320.........330.........340.........350
Sequence IKVSGDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETIGGGATGPALEKLYALLDLKANMAE
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Known secondary structure (DSSP)



SSS


TT
S
S








SSS


SSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence RKIRAGLRLFFWFFAEYLRNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNP
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Known secondary structure (DSSP) SSSTS



T

SS



SS
STT
 .........430.........
Sequence FVQDPEEELARIEEEMNQY
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Known secondary structure (DSSP) S
S
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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