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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5a1yH_

Fold library idPDB HeaderMoleculeTitle
c5a1yH_PDB header: transport proteinChain: H: PDB Molecule: coatomer subunit delta;PDBTitle: the structure of the copi coat linkage iv


Added to library: Sat Jul 11 08:20:46 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLIT
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Known secondary structure (DSSP)



TTT
SSTT
SSGGGTTT
SS
STTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence TKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEPPINM
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Known secondary structure (DSSP) SS
S
SS

TTT




-


SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ESVHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVDKKLFTAE
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Known secondary structure (DSSP)

TT





SS






SS

B


TT

SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITI
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Known secondary structure (DSSP)


S


TTTTS
STTT


S

SSS
SSTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSIPGQPNDFFPVQVSFISKKNYCNI
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Known secondary structure (DSSP)

SS


SSSTTTTSS





SS





SS
TT

 .........360.........370.........380
Sequence QVTKVTQVDGNSPVRFSTETTFLVDKYEIL
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Known secondary structure (DSSP)

SSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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