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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5a1uC_

Fold library idPDB HeaderMoleculeTitle
c5a1uC_PDB header: transport proteinChain: C: PDB Molecule: coatomer subunit alpha;PDBTitle: the structure of the copi coat triad


Added to library: Sat Jul 11 10:12:51 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGG
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Known secondary structure (DSSP)

S

SSSSTTSTTTT

SS


TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence DDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMC
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Known secondary structure (DSSP) TTS
SSS
S



SS

SSSSTTSSSSS




SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence AQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNW
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Known secondary structure (DSSP)
SSSSTTSSSSSSS



SS
SS
S

SS
SSS


S
SS

S


SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AAFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSK
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Known secondary structure (DSSP)
TT
SSSSTTT

SSS


SS

SSSSSSSTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence RTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSK
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Known secondary structure (DSSP)
S
SS




TTSS

SS



S


SS



SSSS

S

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence DVAVMQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
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Known secondary structure (DSSP) S




S

S
SS

S
TTSSS

SSS

SSS

S
S
SSSSTT

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence VARNRFAVLDRMHSLLIKNLKNEITKKIQVPNCDEIFYAGTGNLLLRDADSITLFDVQQKRTLASVKISK
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Known secondary structure (DSSP) TTTTSSSS


SSSS

S






SS




TTTT
B
SSS
SS
SS



 .........500.........510.........520.........530.........540.........550.........560
Sequence VKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGVFIYTTSNHIKYAVTTGDHGI
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Known secondary structure (DSSP) SS

B

SSTT

SSSTTT


SS

SSSSS
SSSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence IRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQ
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Known secondary structure (DSSP)
SS


SS

SS




SSTT
S

TTS

SSSSSSSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence KKGYPEVALHFVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNF
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Known secondary structure (DSSP)

SS
S


ST

TT
S
ST
 .........710.........720.........730.........740.........750.........760.........770
Sequence DKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLSAATHGLDEE
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Known secondary structure (DSSP) T
STTT
TTTTTSSS

T
TT
 .........780.........790.........800.........810...
Sequence AESLKETFDPEKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTV
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Known secondary structure (DSSP) S







SS
SSS








SS
SSS




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Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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