PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4zkcA_

Fold library id	PDB Header	Molecule	Title
c4zkcA_	PDB header: viral protein/cytokine	Chain: A: PDB Molecule: chemokine binding protein;	PDBTitle: orf chemokine binding protein complexed with ccl7

Links to external resources
Added to library: Sat Jul 11 08:18:17 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S E E K A N F C S T H N D E V Y A R F R L Q M R V G V R H S P L Y T P S N M C M L D I E D S V E D I E E S T E K E Y A S T A T G E A A G V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
B
S S S S S B T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V S V A L V G E G V S I P F S Y I G L G F N P S L E D S Y L Y V N V S S R A P W V K Q T S D L S A N G G W G I K Q V L E K E L L A I Q I G C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S
T T T S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D N Q K F P E P A D I D F S L L V D P R C V T S V D L H V E L R D A C I D Y K Q E S P L S L K G K Y G D G E L V K K E I K D V G K N H N M C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B
T T T T T G G G S S
S
S S T T
T T S S

. . . . . . .

Sequence S L N L N P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	E	E	K	A	N	F	C	S	T	H	N	D	E	V	Y	A	R	F	R	L	Q	M	R	V	G	V	R	H	S	P	L	Y	T	P	S	N	M	C	M	L	D	I	E	D	S	V	E	D	I	E	E	S	T	E	K	E	Y	A	S	T	A	T	G	E	A	A	G	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T																		T	T																	B		S	S	S	S	S	B											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	S	V	A	L	V	G	E	G	V	S	I	P	F	S	Y	I	G	L	G	F	N	P	S	L	E	D	S	Y	L	Y	V	N	V	S	S	R	A	P	W	V	K	Q	T	S	D	L	S	A	N	G	G	W	G	I	K	Q	V	L	E	K	E	L	L	A	I	Q	I	G	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S															S	S	S													T	T	T	S					T	T													T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	N	Q	K	F	P	E	P	A	D	I	D	F	S	L	L	V	D	P	R	C	V	T	S	V	D	L	H	V	E	L	R	D	A	C	I	D	Y	K	Q	E	S	P	L	S	L	K	G	K	Y	G	D	G	E	L	V	K	K	E	I	K	D	V	G	K	N	H	N	M	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T								B									T	T	T													T	T	G	G	G	S	S			S								S	S									T	T		T	T	S	S
	.	.	.	.	.	.	.
Sequence	S	L	N	L	N	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)