PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4zdmA_

Fold library id	PDB Header	Molecule	Title
c4zdmA_	PDB header: membrane protein	Chain: A: PDB Molecule: glutamate receptor kainate-like protein;	PDBTitle: pleurobrachia bachei iglur3 lbd glycine complex

Links to external resources
Added to library: Sat Oct 24 14:10:45 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S N N L N G M H L R L G I I P E M P F I S E P S L G C T N I R D P S C Y T G V N V E I V S M M S Q D L N F T Y N F I T P E D L K F G G K E W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B T T T B
T T
S
T T
G G G
S T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N G L I R D L L D N K T D M I V V A L S N N A V R K A D I D F S L S M M D G G L G A L V K S D G T D L S H P L E L L N Q D K Y Q W G V V D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
T T S
S
S
S S
S S G G G G G G
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R N P E L L L A S N Q N A D Y N R I A E D A V K V G S Y G E G L E R M R A G G F V F I D E I P G I N Y A T K G E C D I V Q I G E T F Q P F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S S T S S T T T T
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence L A F G L R K N S P F K N L V D T F M L G I R E Q G V I S E L Y A K Y E N Q K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	N	N	L	N	G	M	H	L	R	L	G	I	I	P	E	M	P	F	I	S	E	P	S	L	G	C	T	N	I	R	D	P	S	C	Y	T	G	V	N	V	E	I	V	S	M	M	S	Q	D	L	N	F	T	Y	N	F	I	T	P	E	D	L	K	F	G	G	K	E	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T										B	T	T	T	B					T	T		S		T	T		G	G	G			S														T									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	G	L	I	R	D	L	L	D	N	K	T	D	M	I	V	V	A	L	S	N	N	A	V	R	K	A	D	I	D	F	S	L	S	M	M	D	G	G	L	G	A	L	V	K	S	D	G	T	D	L	S	H	P	L	E	L	L	N	Q	D	K	Y	Q	W	G	V	V	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S		S														T	T	S				S		S													S	S			S	S	G	G	G	G	G	G		S	S							T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	N	P	E	L	L	L	A	S	N	Q	N	A	D	Y	N	R	I	A	E	D	A	V	K	V	G	S	Y	G	E	G	L	E	R	M	R	A	G	G	F	V	F	I	D	E	I	P	G	I	N	Y	A	T	K	G	E	C	D	I	V	Q	I	G	E	T	F	Q	P	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S										S											S				S	S										T	S	S								T						T	T	T		T	T					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	L	A	F	G	L	R	K	N	S	P	F	K	N	L	V	D	T	F	M	L	G	I	R	E	Q	G	V	I	S	E	L	Y	A	K	Y	E	N	Q	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T		T	T														T	T