Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4zadB_

Fold library idPDB HeaderMoleculeTitle
c4zadB_PDB header: lyaseChain: B: PDB Molecule: fdc1;PDBTitle: structure of c. dubliensis fdc1 with the prenylated-flavin cofactor in2 the iminium form.


Added to library: Sat Jun 20 08:33:36 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LNPALKFRDFIQVLKNEGDLIEIDTEVDPNLEVGAITRKAYENKLAAPLFNNLKQDPENIDPKNLFRILG
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)

TTT
TT

S
B
TBTTT

S
B


TT
S
TTTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence CPGGLRGFGNDHARIALHLGLDSQTPMKEIIDFLVANRNPKKYIPPVLVPNDQSPHKKHHLTKEQIDLTK
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)
TTS

SSS
TTT

TT

T

GGG





GGG
GGGGGGG

GGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence LPVPLLHHGDGGKFIQTYGMWVLQTPDKSWTNWSIARGMVHDSKSITGLVINPQHVKQVSDAWVAAGKGD
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) S


B
STT
SS


BSS
TTSS



TT


TT
TT
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KIPFALCFGVPPAAILVSSMPIPDGATEAEYIGGLCNQAVPVVKCETNDLEVPADCEMVFEGYLDRDTLV
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
S

TS


TT

TS


SSSS
SS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence REGPFGEMHGYCFPKDHHTQPLYRVNHISYRDQAIMPISNPGLCTDETHTLIGGLVSAETKYLISQHPVL
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)





TTS


TT



TT





SSSSTT
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence SKIVEDVFTPYEAQALWLAVKINTHELVKLKTNAKELSNLVGDFLFRSKECYKVCSILHEIILVGDDIDI
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)

GGGTT

TTT

STTTTTTTTT

TTS
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence FDFKQLIWAYTTRHTPVQDQLYFDDVKPFALAPFASQGPLIKTRQGGKCVTTCIFPKQFTDPDFEFVTCN
Predicted secondary structure

















































SS confidence





































































Known secondary structure (DSSP) TSS
TTTTSSS


TTSTSS



S
GGGGT
TT





S
 .........500.........510
Sequence FNGYPEEVNKISQNWDKYYK
Predicted secondary structure




SS confidence



















Known secondary structure (DSSP) GGGS
S


T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D