PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4z34A_

Fold library id	PDB Header	Molecule	Title
c4z34A_	PDB header: transport protein/inhibitor	Chain: A: PDB Molecule: lysophosphatidic acid receptor 1, soluble cytochrome b562;	PDBTitle: crystal structure of human lysophosphatidic acid receptor 1 in complex2 with ono9780307

Links to external resources
Added to library: Sat Jun 6 09:30:23 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N E P Q C F Y N E S I A F F Y N R S G K H L A T E W N T V S K L V M G L G I T V C I F I M L A N L L V M V A I Y V N R R F H F P I Y Y L M A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T T
S S
G G G
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N L A A A D F F A G L A Y F Y L M F N T G P N T R R L T V S T W L L R Q G L I D T S L T A S V A N L L A I A I E R H I T V F R M Q L H T R M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S G G G G T T
T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S N R R V V V V I V V I W T M A I V M G A I P S V G W N C I C D I E N C S N M A P L Y S D S Y L V F W A I F N L V T F V V M V V L Y A H I F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G T T
S S T T
G G G B
S S
T T S B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G Y V A D L E D N W E T L N D N L K V I E K A D N A A Q V K D A L T K M R A A A L D A Q K A M K D F R H G F D I L V G Q I D D A L K L A N E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G K V K E A Q A A A E Q L K T T R N A Y I Q K Y L R N R D T M M S L L K T V V I V L G A F I I C W T P G L V L L L L D V C C P Q C D V L A Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T
T T T S
T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . .

Sequence E K F F L L L A E F N S A M N P I I Y S Y R D K E M S A T F R Q I L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	E	P	Q	C	F	Y	N	E	S	I	A	F	F	Y	N	R	S	G	K	H	L	A	T	E	W	N	T	V	S	K	L	V	M	G	L	G	I	T	V	C	I	F	I	M	L	A	N	L	L	V	M	V	A	I	Y	V	N	R	R	F	H	F	P	I	Y	Y	L	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		S	T									T	T					S	S																																		G	G	G		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	L	A	A	A	D	F	F	A	G	L	A	Y	F	Y	L	M	F	N	T	G	P	N	T	R	R	L	T	V	S	T	W	L	L	R	Q	G	L	I	D	T	S	L	T	A	S	V	A	N	L	L	A	I	A	I	E	R	H	I	T	V	F	R	M	Q	L	H	T	R	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	S	G	G	G	G	T	T																																			T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	N	R	R	V	V	V	V	I	V	V	I	W	T	M	A	I	V	M	G	A	I	P	S	V	G	W	N	C	I	C	D	I	E	N	C	S	N	M	A	P	L	Y	S	D	S	Y	L	V	F	W	A	I	F	N	L	V	T	F	V	V	M	V	V	L	Y	A	H	I	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T	G	G	G	T	T		S	S	T	T		G	G	G	B		S	S		T	T	S	B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	Y	V	A	D	L	E	D	N	W	E	T	L	N	D	N	L	K	V	I	E	K	A	D	N	A	A	Q	V	K	D	A	L	T	K	M	R	A	A	A	L	D	A	Q	K	A	M	K	D	F	R	H	G	F	D	I	L	V	G	Q	I	D	D	A	L	K	L	A	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						S																					T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	K	V	K	E	A	Q	A	A	A	E	Q	L	K	T	T	R	N	A	Y	I	Q	K	Y	L	R	N	R	D	T	M	M	S	L	L	K	T	V	V	I	V	L	G	A	F	I	I	C	W	T	P	G	L	V	L	L	L	L	D	V	C	C	P	Q	C	D	V	L	A	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																								T	T	T																																				T	T	T	S				T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Sequence	E	K	F	F	L	L	L	A	E	F	N	S	A	M	N	P	I	I	Y	S	Y	R	D	K	E	M	S	A	T	F	R	Q	I	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T