PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4yv7A_

Fold library id	PDB Header	Molecule	Title
c4yv7A_	PDB header: solute-binding protein	Chain: A: PDB Molecule: periplasmic binding protein/laci transcriptional regulator;	PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from mycobacterium smegmatis (msmei_3018, target efi-3 511327) with bound glycerol

Links to external resources
Added to library: Sat Apr 4 09:29:53 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G A L K I G F S Q A T Q Q S P F Y V A L T D A A K A E A Q A Q G D E L F Y A D A N G D I T K Q N N D V Q D L I T R G I N V L V I N P V D P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T
T T
T T
S
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G V T P S L A A A E A A G I K V V T V D R P V E S G A A S F V G R D N K A X G E L V G K A A V D T L G P D G G K I I E I Q G D A G G A V A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S S
S S
S
G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D R R D G F Q A A V S G R P N I T I V E G P Y C D Y I R S K A V T A X Q D L L Q A H P D L K G V Y A Q N D D X A L G A X Q V L A E N N R T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T
T T S S T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V K V F G V D G L X E A V R A I A D G D Q Y V A T A L N D P D A E G R L A I Q T A A K V A R G E S V P E F V D A G T G L V D K S N A S A L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S B
B
S S B
T T
S
G G G

. . . . . . . .

Sequence G Q S T F A A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	A	L	K	I	G	F	S	Q	A	T	Q	Q	S	P	F	Y	V	A	L	T	D	A	A	K	A	E	A	Q	A	Q	G	D	E	L	F	Y	A	D	A	N	G	D	I	T	K	Q	N	N	D	V	Q	D	L	I	T	R	G	I	N	V	L	V	I	N	P	V	D	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S			S	S																	T	T									T	T															T	T		S							S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	V	T	P	S	L	A	A	A	E	A	A	G	I	K	V	V	T	V	D	R	P	V	E	S	G	A	A	S	F	V	G	R	D	N	K	A	X	G	E	L	V	G	K	A	A	V	D	T	L	G	P	D	G	G	K	I	I	E	I	Q	G	D	A	G	G	A	V	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T										T	T							S	S			S	S			S																							G	G	G											T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	R	R	D	G	F	Q	A	A	V	S	G	R	P	N	I	T	I	V	E	G	P	Y	C	D	Y	I	R	S	K	A	V	T	A	X	Q	D	L	L	Q	A	H	P	D	L	K	G	V	Y	A	Q	N	D	D	X	A	L	G	A	X	Q	V	L	A	E	N	N	R	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T		T	T										T	T																	T	T							S	S														T	T		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	K	V	F	G	V	D	G	L	X	E	A	V	R	A	I	A	D	G	D	Q	Y	V	A	T	A	L	N	D	P	D	A	E	G	R	L	A	I	Q	T	A	A	K	V	A	R	G	E	S	V	P	E	F	V	D	A	G	T	G	L	V	D	K	S	N	A	S	A	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S					S	B		B											S	S						B																			T	T					S															G	G	G
	.	.	.	.	.	.	.	.
Sequence	G	Q	S	T	F	A	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S	B