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| Protein Homology/analogY Recognition Engine V 2.2 | |||||||
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| Fold library id | PDB Header | Molecule | Title |
|---|---|---|---|
| c4ytkA_ | PDB header: transcription | Chain: A: PDB Molecule: transcription elongation factor spt5; | PDBTitle: structure of the kow1-linker1 domain of transcription elongation2 factor spt5 |
| Added to library: Sat Aug 15 08:28:35 2015 | |
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| Links to external resources | |
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|   | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
| Sequence | L | E | E | G | S | Y | V | R | I | K | R | G | I | Y | K | G | D | L | A | M | V | D | Q | I | S | E | N | N | L | E | V | M | L | K | I | V | P | R | L | D | Y | G | K | F | D | E | R | P | T | F | A | H | R | A | P | P | Q | L | F | N | P | T | M | A | L | R | L | D | Q | A |
| Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | ![]() | S | S | T | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | T | G | G | G | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | G | G |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
| Sequence | N | L | Y | K | R | D | D | R | H | F | T | Y | K | N | E | D | Y | I | D | G | Y | L | Y | K | S | F | R | I | Q | H | V | E | T | K | N | I | Q | P | T | V | E | E | L | A | R | F | ||||||||||||||||||||||||
| Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | G | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |
| Download: | PDB structure | FASTA sequence |
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