PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ys8B_

Fold library id	PDB Header	Molecule	Title
c4ys8B_	PDB header: transferase	Chain: B: PDB Molecule: 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase;	PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase (ispd) from burkholderia thailandensis

Links to external resources
Added to library: Sat Apr 4 08:39:05 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S M V T S R L F A L I P C A L P K Q Y R T L A G R A L L H Y T L A A F D A C S E F A Q T L V V I S P D D A H F D A R R F A G L R F A V R R C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S T T T
T T
S
T T
S
G G G G T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G G A S R Q A S V M N G L I Q L A E F G A T D A D W V L V H D A A R P G I T P A L I R T L I G A L K D D P V G G I V A L P V A D T L K R V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G T
T T S
T T
T T
T T
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A G G D A I E R T E S R N G L W Q A Q T P Q M F R I G M L R D A I Q R A Q L E G R D L T D E A S A I E W A G H T P R V V Q G S L R N F K V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T
S T
G G G

. . . . . . . . . 220 . . .

Sequence Y P E D F D L A E A I L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	M	V	T	S	R	L	F	A	L	I	P	C	A	L	P	K	Q	Y	R	T	L	A	G	R	A	L	L	H	Y	T	L	A	A	F	D	A	C	S	E	F	A	Q	T	L	V	V	I	S	P	D	D	A	H	F	D	A	R	R	F	A	G	L	R	F	A	V	R	R	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	G	G	G	S			T	T													T		T	T		S								T	T			S			G	G	G	G	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	G	A	S	R	Q	A	S	V	M	N	G	L	I	Q	L	A	E	F	G	A	T	D	A	D	W	V	L	V	H	D	A	A	R	P	G	I	T	P	A	L	I	R	T	L	I	G	A	L	K	D	D	P	V	G	G	I	V	A	L	P	V	A	D	T	L	K	R	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S													G	G	G	T			T	T	S							T	T		T	T														T	T		S	S										S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	G	G	D	A	I	E	R	T	E	S	R	N	G	L	W	Q	A	Q	T	P	Q	M	F	R	I	G	M	L	R	D	A	I	Q	R	A	Q	L	E	G	R	D	L	T	D	E	A	S	A	I	E	W	A	G	H	T	P	R	V	V	Q	G	S	L	R	N	F	K	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T											T	T																									T	T					S									T										G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	Y	P	E	D	F	D	L	A	E	A	I	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S