PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ys6A_

Fold library id	PDB Header	Molecule	Title
c4ys6A_	PDB header: solute-binding protein	Chain: A: PDB Molecule: putative solute-binding component of abc transporter;	PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from clostridium phytofermentans (cphy_1585, target efi-3 511156) with bound beta-d-glucose

Links to external resources
Added to library: Sat Apr 11 08:37:16 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K L V G V A X P T K D L Q R W N Q D G S N X E K Q L K D A G Y E V D L Q Y A S N D V Q T Q V S Q I E N X I S N G C K L L V I A S I E G D S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T T T
T T
T T
S
S S T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G T V L A Q A K K K G I S V I A Y D R L I X N S D A V S Y Y A T F D N Y X V G T K Q G E Y I K E K L N L E T A K G P F N L E I F T G D P G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S
T T
T T T T T
B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N N A R F F Y G G A X D V L K P Y V D G G V L V V K S G S V A F E K V A T A G W S T E T A Q N R X D A I I A S Y Y A D G T K L D A V L C S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T
S B
G G G
S S S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D S T A L G V T N A L T A S Y K G E W P I V T G Q D C D I A N V K N X L D G K Q S X S I F K D T R T L A S Q V V K X V D A I X K G G E A P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T S
T S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . .

Sequence N D T K S Y D N G N G I V P S Y L C E P V F A D A T N Y K E L L I D S G Y Y T E D Q L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B S S S
B
S S S B
T T T T T T T S S
G G G G

Download: PDB structure FASTA sequence
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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	L	V	G	V	A	X	P	T	K	D	L	Q	R	W	N	Q	D	G	S	N	X	E	K	Q	L	K	D	A	G	Y	E	V	D	L	Q	Y	A	S	N	D	V	Q	T	Q	V	S	Q	I	E	N	X	I	S	N	G	C	K	L	L	V	I	A	S	I	E	G	D	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		S	S	S	T																T	T									T	T															T	T		S							S	S	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	T	V	L	A	Q	A	K	K	K	G	I	S	V	I	A	Y	D	R	L	I	X	N	S	D	A	V	S	Y	Y	A	T	F	D	N	Y	X	V	G	T	K	Q	G	E	Y	I	K	E	K	L	N	L	E	T	A	K	G	P	F	N	L	E	I	F	T	G	D	P	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T							S	S				S		T	T																								T	T	T	T	T											B			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	N	A	R	F	F	Y	G	G	A	X	D	V	L	K	P	Y	V	D	G	G	V	L	V	V	K	S	G	S	V	A	F	E	K	V	A	T	A	G	W	S	T	E	T	A	Q	N	R	X	D	A	I	I	A	S	Y	Y	A	D	G	T	K	L	D	A	V	L	C	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T	S				T	T				S					B		G	G	G																	S	S	S	S									S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	S	T	A	L	G	V	T	N	A	L	T	A	S	Y	K	G	E	W	P	I	V	T	G	Q	D	C	D	I	A	N	V	K	N	X	L	D	G	K	Q	S	X	S	I	F	K	D	T	R	T	L	A	S	Q	V	V	K	X	V	D	A	I	X	K	G	G	E	A	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	S							S	S											T	T	S																									T	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Sequence	N	D	T	K	S	Y	D	N	G	N	G	I	V	P	S	Y	L	C	E	P	V	F	A	D	A	T	N	Y	K	E	L	L	I	D	S	G	Y	Y	T	E	D	Q	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B	S	S	S		B		S	S	S	B													T	T	T						T	T	T	T	S	S		G	G	G	G