PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4ypiA_

Fold library id	PDB Header	Molecule	Title
c4ypiA_	PDB header: rna binding protein	Chain: A: PDB Molecule: nucleoprotein;	PDBTitle: structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35

Links to external resources
Added to library: Sat Apr 11 08:13:31 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R V I P V Y Q V N N L E E I C Q L I I Q A F E A G V D F Q E S A D S F L L M L C L H H A Y Q G D Y K L F L E S G A V K Y L E G H G F R F E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
S S T S T T
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K K R D G V K R L E E L L P A V S S G K N I K R T L A A M P E E E T T E A N A G Q F L S F A S L F L P K L V V G E K A C L E K V Q R Q I Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S G G G
T T S
T T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H A E Q G L I Q Y P T A W Q S V G H M M V I F R L M R T N F L I K F L L I H Q G M H M V A G H D A N D A V I S N S V A Q A R F S G L L I V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T T S
S T S
S
T T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T V L D H I L Q K T E R G V R L H P L A R T A K V K N E V N S F K A A L S S L A K H G E Y A P F A R L L N L S G V N N L E H G L F P Q L S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G G S G G G T T G G G G G G T
S G G G G
G G G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . .

Sequence I A L G V A T A H G S T L A G V N V G E Q Y Q Q L R E A A T E A E K Q L Q Q Y A E S R E L D H L G L D D Q E K K I L M N F H Q K K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	V	I	P	V	Y	Q	V	N	N	L	E	E	I	C	Q	L	I	I	Q	A	F	E	A	G	V	D	F	Q	E	S	A	D	S	F	L	L	M	L	C	L	H	H	A	Y	Q	G	D	Y	K	L	F	L	E	S	G	A	V	K	Y	L	E	G	H	G	F	R	F	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S																T				S	S	T														S	T	T								S										T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	K	R	D	G	V	K	R	L	E	E	L	L	P	A	V	S	S	G	K	N	I	K	R	T	L	A	A	M	P	E	E	E	T	T	E	A	N	A	G	Q	F	L	S	F	A	S	L	F	L	P	K	L	V	V	G	E	K	A	C	L	E	K	V	Q	R	Q	I	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S			S	S	G	G	G					T	T											S		T	T				S																		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	A	E	Q	G	L	I	Q	Y	P	T	A	W	Q	S	V	G	H	M	M	V	I	F	R	L	M	R	T	N	F	L	I	K	F	L	L	I	H	Q	G	M	H	M	V	A	G	H	D	A	N	D	A	V	I	S	N	S	V	A	Q	A	R	F	S	G	L	L	I	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	S					T	T	T	T	S															S												T	S			S																T	T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	V	L	D	H	I	L	Q	K	T	E	R	G	V	R	L	H	P	L	A	R	T	A	K	V	K	N	E	V	N	S	F	K	A	A	L	S	S	L	A	K	H	G	E	Y	A	P	F	A	R	L	L	N	L	S	G	V	N	N	L	E	H	G	L	F	P	Q	L	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T						G	G	G	G	S	G	G	G																T	T	G	G	G	G	G	G					T		S	G	G	G	G			G	G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Sequence	I	A	L	G	V	A	T	A	H	G	S	T	L	A	G	V	N	V	G	E	Q	Y	Q	Q	L	R	E	A	A	T	E	A	E	K	Q	L	Q	Q	Y	A	E	S	R	E	L	D	H	L	G	L	D	D	Q	E	K	K	I	L	M	N	F	H	Q	K	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S				T	T																																	S	S