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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ypiA_

Fold library idPDB HeaderMoleculeTitle
c4ypiA_PDB header: rna binding proteinChain: A: PDB Molecule: nucleoprotein;PDBTitle: structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35


Added to library: Sat Apr 11 08:13:31 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RVIPVYQVNNLEEICQLIIQAFEAGVDFQESADSFLLMLCLHHAYQGDYKLFLESGAVKYLEGHGFRFEV
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Known secondary structure (DSSP)

S
T


SSTSTT
ST
 .........80.........90.........100.........110.........120.........130.........140
Sequence KKRDGVKRLEELLPAVSSGKNIKRTLAAMPEEETTEANAGQFLSFASLFLPKLVVGEKACLEKVQRQIQV
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Known secondary structure (DSSP)

S

SSGGG



TTS
TT


S

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence HAEQGLIQYPTAWQSVGHMMVIFRLMRTNFLIKFLLIHQGMHMVAGHDANDAVISNSVAQARFSGLLIVK
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Known secondary structure (DSSP) TS



TTTTS
STS

S

TTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence TVLDHILQKTERGVRLHPLARTAKVKNEVNSFKAALSSLAKHGEYAPFARLLNLSGVNNLEHGLFPQLSA
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Known secondary structure (DSSP) TT
GGGGSGGGTTGGGGGGT
SGGGG

GGG
 .........290.........300.........310.........320.........330.........340......
Sequence IALGVATAHGSTLAGVNVGEQYQQLREAATEAEKQLQQYAESRELDHLGLDDQEKKILMNFHQKKN
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Known secondary structure (DSSP) S


TT



SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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