PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4yokA_

Fold library id	PDB Header	Molecule	Title
c4yokA_	PDB header: unknown function	Chain: A: PDB Molecule: putative flagellar protein flis;	PDBTitle: crystal structure of a duf3823 family protein (parmer_04126) from2 parabacteroides merdae atcc 43184 at 1.80 a resolution

Links to external resources
Added to library: Sat Mar 28 08:14:11 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D A P E S K L V G R V T Y Q G Q A L N L R G T G E A V Q L Q L Y Q D G Y E K N D P I S V F V G Q D G T F S A L L F D G E Y R L T T R D G N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B
S T T
S
S S S
T T S S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P W V N N H E S V T V N L K G H T E V N L E V T P Y F X I S N E Q L S V T G S A X N A S F X I N R I V P D A K I S R V X L L L S K T Q F A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B
S
S S S
B S
S S
S T T
S S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . .

Sequence D V N N L Y R Q D F S D V V P G S V N L S A D I S G N T E I V K A K A L Y A R V G V L A N G A D Q A I Y S P V V R L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S S S
S
T T
S S
T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	A	P	E	S	K	L	V	G	R	V	T	Y	Q	G	Q	A	L	N	L	R	G	T	G	E	A	V	Q	L	Q	L	Y	Q	D	G	Y	E	K	N	D	P	I	S	V	F	V	G	Q	D	G	T	F	S	A	L	L	F	D	G	E	Y	R	L	T	T	R	D	G	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T				B				S	T	T		S								S	S	S											T	T	S								S									T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	W	V	N	N	H	E	S	V	T	V	N	L	K	G	H	T	E	V	N	L	E	V	T	P	Y	F	X	I	S	N	E	Q	L	S	V	T	G	S	A	X	N	A	S	F	X	I	N	R	I	V	P	D	A	K	I	S	R	V	X	L	L	L	S	K	T	Q	F	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B			S									S	S	S									B	S												S	S												S	T	T												S	S	S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Sequence	D	V	N	N	L	Y	R	Q	D	F	S	D	V	V	P	G	S	V	N	L	S	A	D	I	S	G	N	T	E	I	V	K	A	K	A	L	Y	A	R	V	G	V	L	A	N	G	A	D	Q	A	I	Y	S	P	V	V	R	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S		S						S	S			S										T	T								S	S										T	T		S	S