PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4yo7A_

Fold library id	PDB Header	Molecule	Title
c4yo7A_	PDB header: solute binding protein	Chain: A: PDB Molecule: sugar abc transporter (sugar-binding protein);	PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from bacillus halodurans c-125 (bh2323, target efi-3 511484) with bound myo-inositol

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Added to library: Sat Mar 28 08:57:22 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T G D S G Q K V I G V S I S N L D E F L T Y X Q D A X K E E A A N Y P D F E F I F S D A Q N D S T Q Q X A Q V E N F I S R N V D A I I V N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T
T T
T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V D T T S A V D I V N X V N D A G I P I I I A N R T F D G V D Q A T A F V G S E S I Q S G L L Q X E E V A K L L N N E G N I A I X D G E L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
S
T T G G G S S
T T T
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H E A Q I X R T E G N K Q I I E E H D G L E V V L Q G T A K F D R S E G X R L X E N W L N S G T E I D A V V A N N D E X A L G A I L A L E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
T T
T T
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V G K L D D V I V A G I D A T P A A L E A X K E G K L D V T V F Q D A K G Q G A T S V K V A V Q A A N G E D V E D A X I P Y E L V T P E N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S
S B
T T
B
T T
T T T

. . . . . . .

Sequence E E Y E A K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	G	D	S	G	Q	K	V	I	G	V	S	I	S	N	L	D	E	F	L	T	Y	X	Q	D	A	X	K	E	E	A	A	N	Y	P	D	F	E	F	I	F	S	D	A	Q	N	D	S	T	Q	Q	X	A	Q	V	E	N	F	I	S	R	N	V	D	A	I	I	V	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S																		T	T		T	T									T	T																T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	D	T	T	S	A	V	D	I	V	N	X	V	N	D	A	G	I	P	I	I	I	A	N	R	T	F	D	G	V	D	Q	A	T	A	F	V	G	S	E	S	I	Q	S	G	L	L	Q	X	E	E	V	A	K	L	L	N	N	E	G	N	I	A	I	X	D	G	E	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																T							S				T	T	G	G	G	S	S																						T	T	T										S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	E	A	Q	I	X	R	T	E	G	N	K	Q	I	I	E	E	H	D	G	L	E	V	V	L	Q	G	T	A	K	F	D	R	S	E	G	X	R	L	X	E	N	W	L	N	S	G	T	E	I	D	A	V	V	A	N	N	D	E	X	A	L	G	A	I	L	A	L	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T		T	T										T	T															T	T				S					S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	G	K	L	D	D	V	I	V	A	G	I	D	A	T	P	A	A	L	E	A	X	K	E	G	K	L	D	V	T	V	F	Q	D	A	K	G	Q	G	A	T	S	V	K	V	A	V	Q	A	A	N	G	E	D	V	E	D	A	X	I	P	Y	E	L	V	T	P	E	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		G	G	G	S					S	B											T	T				B																						T	T															T	T	T
	.	.	.	.	.	.	.
Sequence	E	E	Y	E	A	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T