PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ymuC_

Fold library id	PDB Header	Molecule	Title
c4ymuC_	PDB header: protein binding/transport protein	Chain: C: PDB Molecule: abc-type amino acid transport system, permease component;	PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps

Links to external resources
Added to library: Sat Apr 25 09:00:13 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M T V D F L S M V K Y T P L F I S G L I M T L K L T F L A V T I G V L M G L F I A L M K M S S I K P I K L V A S S Y I E V I R G T P L L V Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G G G G T
S S T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L L L I Y N G L M Q F G M N I P A F T A G V S A L A I N S S A Y V A E I I R A G I Q A V D P G Q N E A A R S L G M T H A M A M R Y V I I P Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T S
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A I K N I L P A L G N E F I V M L K E S A I V S V I G F A D L T R Q A D I I Q S V T Y R Y F E P Y I I I A A I Y F V M T L T F S K L L S L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G G T
S T T T

. . . . .

Sequence E R R L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	T	V	D	F	L	S	M	V	K	Y	T	P	L	F	I	S	G	L	I	M	T	L	K	L	T	F	L	A	V	T	I	G	V	L	M	G	L	F	I	A	L	M	K	M	S	S	I	K	P	I	K	L	V	A	S	S	Y	I	E	V	I	R	G	T	P	L	L	V	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	G	G	G	G	G	G																																		T		S	S																T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	L	L	I	Y	N	G	L	M	Q	F	G	M	N	I	P	A	F	T	A	G	V	S	A	L	A	I	N	S	S	A	Y	V	A	E	I	I	R	A	G	I	Q	A	V	D	P	G	Q	N	E	A	A	R	S	L	G	M	T	H	A	M	A	M	R	Y	V	I	I	P	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T																														T	T	S											T	T										T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	I	K	N	I	L	P	A	L	G	N	E	F	I	V	M	L	K	E	S	A	I	V	S	V	I	G	F	A	D	L	T	R	Q	A	D	I	I	Q	S	V	T	Y	R	Y	F	E	P	Y	I	I	I	A	A	I	Y	F	V	M	T	L	T	F	S	K	L	L	S	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					G	G	G	G	G	G	T			S	T	T	T
	.	.	.	.	.
Sequence	E	R	R	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T