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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ylfD_

Fold library idPDB HeaderMoleculeTitle
c4ylfD_PDB header: oxidoreductaseChain: D: PDB Molecule: dihydropyrimidine dehydrogenase subunit a;PDBTitle: insights into flavin-based electron bifurcation via the nadh-dependent2 reduced ferredoxin-nadp oxidoreductase structure


Added to library: Sat Jul 11 09:05:36 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKNRKTPMKEQSPESRRRNFEEVALGYTLEEALEEAQRCLQCPTHPCVSGCPVEIDIPGFIRKLRDGKLE
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Known secondary structure (DSSP)

SS




B

TT

S
SB



TT



TT
GGGGGSTT


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence ESYRILKSYNNLPAVCGRVCPQEVQCESRCVVGKMKDSEPVAIGRLERFVADWAAENLEEDVKPLAGSKK
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Known secondary structure (DSSP)
S
S
GGGTGGGS
STT












TTSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence EKVAVVGSGPAGLTAAADLAKMGYHVDIFEAFHKPGGVLVYGIPEFRLPKRIVEREVSYIRKLGVNFHLN
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Known secondary structure (DSSP)


STT

SSSSS
STS
TTTS
TTT

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence TVVGKTVKVKELLSEYDAVFIGTGAGTPKFMGIPGTNLNGVYSANEFLTRVNLMKAYLFPEYDTPIRVGK
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Known secondary structure (DSSP)

BTTTB

S









TTTTSBTTTTTGGGTTSSS





S
 .........290.........300.........310.........320.........330.........340.........350
Sequence KVAVIGAGNTAMDAARSALRLGAEKVYIVYRRTEREMPARREEYHHALEEGIEFLWLTLPIRYIGDANGN
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Known secondary structure (DSSP)

STT
S
SS
TTS

S
TT
TT
SSSB
 .........360.........370.........380.........390.........400.........410.........420
Sequence VEAMECVRMELKEADGSGRPRPVPIEGSNFVLEVDMVIEAIGQGPNRVLLSEFPGLELNERGYIKADEDT
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Known secondary structure (DSSP)



SSS
S

TT


S
S


TSTT

B
TTSSB


TTT
 .........430.........440.........450.........460........
Sequence GATSVKGVFAGGDIVTGAATVIKAMGAGKKAAQFIHSYLTGEWNPWQK
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Known secondary structure (DSSP)
B
SSTT
S
S

TTS

S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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