PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ylfA_

Fold library id	PDB Header	Molecule	Title
c4ylfA_	PDB header: oxidoreductase	Chain: A: PDB Molecule: dihydroorotate dehydrogenase b (nad(+)), electron transfer	PDBTitle: insights into flavin-based electron bifurcation via the nadh-dependent2 reduced ferredoxin-nadp oxidoreductase structure

Links to external resources
Added to library: Sat Jul 11 08:26:47 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M G G T A L N E I V K K V K I A E D V F D F W I H S P S V S K E A R P G Q F V V I R L H E K G E R I P L T V A D T K P E E G L F R M V V K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S B
S S S
T T
S S T T
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V G K T T H E L S L K K E G D T I L D V V G P L G N P S E I E N Y G N V L L V G G G V G I A T L Y P I A K A L K E A G N N I T T V L G A R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
B
S S
S G G G G T T T T T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K D Y L I M V D E F K E I S D V L L V T D D G S A G M K G V V T D A M D K L F R E R K F D I C W A V G P T I M M K F C T L K A R E F G V P I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S S S S S S S S
T T T T T T T
S
S S T T T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . .

Sequence W V S L N P I M V D G T G M C G A C R V T V S G Q I K F A C V D G P E F R G E E V D W D E L L K R L A Q Y R E Q E K I S Y E R F L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S S S
T T T T T T T T
S T T T B
T S
S T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	G	G	T	A	L	N	E	I	V	K	K	V	K	I	A	E	D	V	F	D	F	W	I	H	S	P	S	V	S	K	E	A	R	P	G	Q	F	V	V	I	R	L	H	E	K	G	E	R	I	P	L	T	V	A	D	T	K	P	E	E	G	L	F	R	M	V	V	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S			S	S	B								S	S	S																	T	T							S	S	T	T													T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	G	K	T	T	H	E	L	S	L	K	K	E	G	D	T	I	L	D	V	V	G	P	L	G	N	P	S	E	I	E	N	Y	G	N	V	L	L	V	G	G	G	V	G	I	A	T	L	Y	P	I	A	K	A	L	K	E	A	G	N	N	I	T	T	V	L	G	A	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S											T	T		B		S							S									S								G	G	G	G	T	T	T									T	T	T										S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	D	Y	L	I	M	V	D	E	F	K	E	I	S	D	V	L	L	V	T	D	D	G	S	A	G	M	K	G	V	V	T	D	A	M	D	K	L	F	R	E	R	K	F	D	I	C	W	A	V	G	P	T	I	M	M	K	F	C	T	L	K	A	R	E	F	G	V	P	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S											S						S	S	S	S	S			S	S						T	T	T	T	T	T	T				S						S	S										T	T	T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Sequence	W	V	S	L	N	P	I	M	V	D	G	T	G	M	C	G	A	C	R	V	T	V	S	G	Q	I	K	F	A	C	V	D	G	P	E	F	R	G	E	E	V	D	W	D	E	L	L	K	R	L	A	Q	Y	R	E	Q	E	K	I	S	Y	E	R	F	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	S	S	S	S	S		T	T					T	T					T	T	T	T		S				T	T	T	B										T	S				S								T