PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4yleA_

Fold library id	PDB Header	Molecule	Title
c4yleA_	PDB header: transport protein	Chain: A: PDB Molecule: periplasmic binding protein/laci transcriptional regulator;	PDBTitle: crystal structure of an abc transpoter solute binding protein2 (ipr025997) from burkholderia multivorans (bmul_1631, target efi-3 511115) with an unknown ligand modelled as alpha-d-erythrofuranose

Links to external resources
Added to library: Sat Apr 18 08:41:13 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A G K P K V A L V X K S L A N E F F L T X E N G A K E Y Q K H N A S Q F D L I T N G I K D E T D T A N Q I R I V E Q X I V S K V D A I V L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T T T
S S T T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P A D S K A L V P V V K K A V D A G I I V V N I D N R L D P D V L K S K N L N V P F V G P D N R K G A R K V G D Y L A K K L K A G D Q V G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T T T T
S S
T T T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V E G V S T T T N A Q Q R T A G F Q D A X K A G G X K V V S V Q S G E W E I D K G N A V A S A X L N E Y P N L K A L L C G N D N X A I G A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S T
T T
T T
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence S A V R A A G K Q G K V Y V V G Y D N I N A I K P X L K D G R V L A T A D Q Y A A K Q A V F G I D T A L K A I A E H R K Q A E L V E T P V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T S
S S
G G G T S
B
T T
G G G

. . .

Sequence L V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	G	K	P	K	V	A	L	V	X	K	S	L	A	N	E	F	F	L	T	X	E	N	G	A	K	E	Y	Q	K	H	N	A	S	Q	F	D	L	I	T	N	G	I	K	D	E	T	D	T	A	N	Q	I	R	I	V	E	Q	X	I	V	S	K	V	D	A	I	V	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	S																	T	T	T	T									S	S	T	T															T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	A	D	S	K	A	L	V	P	V	V	K	K	A	V	D	A	G	I	I	V	V	N	I	D	N	R	L	D	P	D	V	L	K	S	K	N	L	N	V	P	F	V	G	P	D	N	R	K	G	A	R	K	V	G	D	Y	L	A	K	K	L	K	A	G	D	Q	V	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	T	T	T	T										T	T							S	S									T	T	T																									S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	E	G	V	S	T	T	T	N	A	Q	Q	R	T	A	G	F	Q	D	A	X	K	A	G	G	X	K	V	V	S	V	Q	S	G	E	W	E	I	D	K	G	N	A	V	A	S	A	X	L	N	E	Y	P	N	L	K	A	L	L	C	G	N	D	N	X	A	I	G	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		T	T	S																		T										T	T																	T	T							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	A	V	R	A	A	G	K	Q	G	K	V	Y	V	V	G	Y	D	N	I	N	A	I	K	P	X	L	K	D	G	R	V	L	A	T	A	D	Q	Y	A	A	K	Q	A	V	F	G	I	D	T	A	L	K	A	I	A	E	H	R	K	Q	A	E	L	V	E	T	P	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		T	T	T	S					S	S			G	G	G							T	S			B																							T	T			G	G	G
	.	.	.
Sequence	L	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)