Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4yczA_

Fold library idPDB HeaderMoleculeTitle
c4yczA_PDB header: structural proteinChain: A: PDB Molecule: fusion protein of sec13 and nup145c;PDBTitle: y-complex hub (nup85-nup120-nup145c-sec13 complex) from m. thermophila2 (a.k.a. t. heterothallica)


Added to library: Sat Apr 4 08:59:46 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DMIHDAVLDYYGRRLATCSSDRTIKIFEIEGETQRLTETLKGHDGAVWCVSWAHPKYGNILASAGYDGKV
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)





SSSS


SSSTT

SS


B

GGG
SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LIWRELNGAWQRIFDFALHKASVNVVSWSPHEAGCLLACASSDGNVSVLEFRDNSWEHSIFHAHGLGVNS
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) SSSS

SS


GGG
S
TTS




SSS





TT



 .........150.........160.........170.........180.........190.........200.........210
Sequence VSWAPATSPGSIVRRFVTGGSDNALKIWAYDPATNTYKLEREPLTGHTDWVRDVAWSPTVLQKSYIASAS
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)

S


S




TTS

TTTT







SS




S
SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DRTVRIWTSDPANPLQWNCKVLAAVWRVSWSLSGNVLAASGGDNKVTLWKENLKGEWECVTNWGPNGLLV
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)


SSS











TTTTSSSS
SSS








BTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence TTHHGEPADGTLAASEESVGSPENLARLQRYIDSVSFKEASPEFRELAQGDPSWELASLLFDDNGYGLPA
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) TBB







B





S
STT
S





STTS
TT
TTSSSSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence FWRQLVSEATDRALAQEPEEKAIICLAGNRVADACGYLLAAGNFRLATLVSGIGMFSQPVRAIYELLARF
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TTTTTTSTT


SSS

SSGGGTT





 .........430.........440.........450.........460.........470.........480.........490
Sequence GLDWMRSFGLRLFYTTGATANVAEAVRSFQADIEQDKEPEPDSALWSLLKAFANQEFDWSDGWLLTKAIY
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
S

TTSSSSSS

STSSS
S
S
TTSS
S

S



 .........500.........510.........520.........530.........540.........550.........560
Sequence ATGKGQDAAEKLDKASLAYASALTAQSQWVPATFVLLQLSDAASREAAVRDHLGRHARRPRNPNSAFSSL
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) S



STSSS
ST

SS


SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence RKFGVPETWIWEAKALDFRARSQQEFLALVWAQNYSEANQAFVHRVGPDLVDFRRLFRFAQLLFKVKGKQ
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TTT

TT


TTTT

TTTGGG








 .........640.........650.........660.........670.........680.........690.........700
Sequence DWDRGAAVYLLYPMARLQGQHGLDKFDHQLFDGLVALRGQTHGDIRQEAAIADMAEDLIRCRGGDPRLFG
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)

T





SS

S
TTTTTS


S



 .........710...
Sequence LLPEDVRSKYMRA
Predicted secondary structure





SS confidence












Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D