PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4ybnB_

Fold library id	PDB Header	Molecule	Title
c4ybnB_	PDB header: oxidoreductase	Chain: B: PDB Molecule: flavin-nucleotide-binding protein;	PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis

Links to external resources
Added to library: Sat Oct 24 14:17:39 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E K Q S T S R E R L D D L L D T I P L A T V A L V R D G H P V A F P I G F G R V G D E L V I H G S T G S P W L R A L A E G A P A A V S V T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L D G V V V A R S S F E S S F R Y R S A T L F G T F E V I A D D A K R G Y L D A L T D R F I P G R T A E L R A S T R K E L A A T L A L A L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T
S T T
T T T S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . .

Sequence I G D D N W S L K L S E G W P D D A D E D I A A G G W A G V V P L T T Q Y G A P L T A P D V A A G T P L P P S V R G M T G E L R N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
B
T T S
T T
T
S B S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	K	Q	S	T	S	R	E	R	L	D	D	L	L	D	T	I	P	L	A	T	V	A	L	V	R	D	G	H	P	V	A	F	P	I	G	F	G	R	V	G	D	E	L	V	I	H	G	S	T	G	S	P	W	L	R	A	L	A	E	G	A	P	A	A	V	S	V	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T											T	T													T	T								T	T									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	D	G	V	V	V	A	R	S	S	F	E	S	S	F	R	Y	R	S	A	T	L	F	G	T	F	E	V	I	A	D	D	A	K	R	G	Y	L	D	A	L	T	D	R	F	I	P	G	R	T	A	E	L	R	A	S	T	R	K	E	L	A	A	T	L	A	L	A	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	S	T	T																																		S	T	T		T	T	T	S										T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence	I	G	D	D	N	W	S	L	K	L	S	E	G	W	P	D	D	A	D	E	D	I	A	A	G	G	W	A	G	V	V	P	L	T	T	Q	Y	G	A	P	L	T	A	P	D	V	A	A	G	T	P	L	P	P	S	V	R	G	M	T	G	E	L	R	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S																															B								T	T	S		T	T									T			S	B	S