PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4yamA_

Fold library id	PDB Header	Molecule	Title
c4yamA_	PDB header: transferase	Chain: A: PDB Molecule: beta-etherase;	PDBTitle: crystal structure of lige-apo form from sphingobium sp. strain syk-6

Links to external resources
Added to library: Sat Dec 19 08:23:27 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R N N T I T L Y D L Q L E S G C T I S P Y V W R T K Y A L K H K G F D I D I V P G G F T G I L E R T G G R S E R V P V I V D D G E W V L D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B
T T S
B
T T
S S
T T S
S S S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W V I A E Y L D E K Y P D R P X L F E G P T Q K N L X K F L D N W L W S T A V G P W F R C Y I L D Y H D L S L P Q D R D Y V R W S R E Q W F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
T S
G G G T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L G G Q R L E D V Q A G R E D R L P L V P P T L E P F R R I L A E T K W L G G D Q P N F A D Y S A L A V F L W T A S V A R T P P L T E D D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T G G G S G G G G T T
S B T T B S S
S S
S B
T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence L R D W L D R G F D L F D G L G R H P G X N P L F G L K L R E G D P E P F V R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T
S B
T T S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	N	N	T	I	T	L	Y	D	L	Q	L	E	S	G	C	T	I	S	P	Y	V	W	R	T	K	Y	A	L	K	H	K	G	F	D	I	D	I	V	P	G	G	F	T	G	I	L	E	R	T	G	G	R	S	E	R	V	P	V	I	V	D	D	G	E	W	V	L	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T								B		T	T	S		B															T	T										S	S						T	T	S			S	S	S						T	T					S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	V	I	A	E	Y	L	D	E	K	Y	P	D	R	P	X	L	F	E	G	P	T	Q	K	N	L	X	K	F	L	D	N	W	L	W	S	T	A	V	G	P	W	F	R	C	Y	I	L	D	Y	H	D	L	S	L	P	Q	D	R	D	Y	V	R	W	S	R	E	Q	W	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	S			S																					T																S		G	G	G												T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	G	G	Q	R	L	E	D	V	Q	A	G	R	E	D	R	L	P	L	V	P	P	T	L	E	P	F	R	R	I	L	A	E	T	K	W	L	G	G	D	Q	P	N	F	A	D	Y	S	A	L	A	V	F	L	W	T	A	S	V	A	R	T	P	P	L	T	E	D	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S							T	T					G	G	G	S	G	G	G	G								T	T		S	B	T	T	B	S	S																				S	S		S	B		T	T		T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	L	R	D	W	L	D	R	G	F	D	L	F	D	G	L	G	R	H	P	G	X	N	P	L	F	G	L	K	L	R	E	G	D	P	E	P	F	V	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T														T	T			T	T				S	B						T	T	S				S