PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4yakD_

Fold library id	PDB Header	Molecule	Title
c4yakD_	2.46	PDB header: ligase	Chain: D: PDB Molecule: beta subunit of acyl-coa synthetase (ndp forming);

Links to external resources
Added to library: Sat Jan 30 08:39:09 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S S R D L L L K A K E N G R K S L L E H E A K Y F I S S Y G I P V T N I R L A K S E E E A V N F S R E I G F P V V L K I V S P Q V V G G V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S B
T T T
B
S S
S S
B
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V N L R S E E E V R K A Y R E I I E N V K R N V P N A E I E G I L V Q E F A P P G V E L I I G L L R D P Q F G P T V M F G L G G V F V E L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T T
B
T T T S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R D V S F R V A P L S E Q D A E S M I K E V K A Y K L L T G F R G M E P V D I E A I K D A L I R A G R I G V E N E E I A E M D L N P V I A Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T T G G G G S
B T T B
T T

. . . . . . . . . 220 . . . .

Sequence P K G I K V V D A R I I L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	S	R	D	L	L	L	K	A	K	E	N	G	R	K	S	L	L	E	H	E	A	K	Y	F	I	S	S	Y	G	I	P	V	T	N	I	R	L	A	K	S	E	E	E	A	V	N	F	S	R	E	I	G	F	P	V	V	L	K	I	V	S	P	Q	V	V	G	G	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T									T	T		S	B												T	T	T			B							S	S													S	S						B		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	N	L	R	S	E	E	E	V	R	K	A	Y	R	E	I	I	E	N	V	K	R	N	V	P	N	A	E	I	E	G	I	L	V	Q	E	F	A	P	P	G	V	E	L	I	I	G	L	L	R	D	P	Q	F	G	P	T	V	M	F	G	L	G	G	V	F	V	E	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B			T	T	T																							B																					T	T	T									S	T					T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	D	V	S	F	R	V	A	P	L	S	E	Q	D	A	E	S	M	I	K	E	V	K	A	Y	K	L	L	T	G	F	R	G	M	E	P	V	D	I	E	A	I	K	D	A	L	I	R	A	G	R	I	G	V	E	N	E	E	I	A	E	M	D	L	N	P	V	I	A	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S													S	T	T	G	G	G	G	S		B	T	T	B																							T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	P	K	G	I	K	V	V	D	A	R	I	I	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S