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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4xsxJ_

Fold library idPDB HeaderMoleculeTitle
c4xsxJ_PDB header: transcription/antibioticChain: J: PDB Molecule: dna-directed rna polymerase subunit beta';PDBTitle: crystal structure of cbr 703 bound to escherichia coli rna polymerase2 holoenzyme


Added to library: Sat Jul 25 08:42:35 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVIC
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Known secondary structure (DSSP)


S






B


B
SSS

B
SSBSS
TTTT

SSTT

SSSS


TT

S
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence EKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLE
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Known secondary structure (DSSP) SSS

B


GGGGGT

SSS
TT

TTSSSS

SSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence RQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLE
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Known secondary structure (DSSP) SS


SSS


S




 .........220.........230.........240.........250.........260.........270.........280
Sequence AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
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Known secondary structure (DSSP) T

GGGG

GGGS


B
GGG
B


TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence KRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ
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Known secondary structure (DSSP) STTSSS

B
TT

SB



SSSS

SSSS



SS

TTS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQ
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Known secondary structure (DSSP) STTTTSSSST
TTTT

SS

SGGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD
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Known secondary structure (DSSP) SSS

GGGT

SSS



STSBTTT

B
SSSSSBS



S
 .........500.........510.........520.........530.........540.........550.........560
Sequence VVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG
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Known secondary structure (DSSP) S


SS
TTTT
SSTTSS
SS

BTTTB
 .........570.........580.........590.........600.........610.........620.........630
Sequence RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV
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Known secondary structure (DSSP) TTS
TTS
GGGTSS



T



GGGS
 .........640.........650.........660.........670.........680.........690.........700
Sequence IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK
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Known secondary structure (DSSP)

TTTTSS



SSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence QVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLAD
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Known secondary structure (DSSP)
S


TSS

SS




B
TTS
B
SS




SSS


 .........780.........790.........800.........810.........820.........830.........840
Sequence TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTAD
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Known secondary structure (DSSP) STT

B
SS











SSB
SS
TT
BBSS

B
SSSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGE
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Known secondary structure (DSSP) BSS
SS
B

S





TTS


SSSB

S
SSSSS


TT

G
 .........920.........930.........940.........950.........960.........970.........980
Sequence PGTQLTSSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV
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Known secondary structure (DSSP) GGGS




B
SS

S


TT



SS

SSS


SSSS
TT
B
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AGGETVANWDPHTMPVIGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM
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Known secondary structure (DSSP)
TT
B

TT





TT


SS


B
SSS
S

SS

SSS



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ
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Known secondary structure (DSSP)
TTS


S
TTS
TT
BSS
S


T
T



 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETT
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Known secondary structure (DSSP) T


S
SSS
SS
SSSSSSS





B



TT

S
S
 .........1200.........1210.........1220.........1230......
Sequence RVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAA
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Known secondary structure (DSSP) T



STS

SSGGGTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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