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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4xqkB_

Fold library idPDB HeaderMoleculeTitle
c4xqkB_PDB header: hydrolase/dnaChain: B: PDB Molecule: llabiii;PDBTitle: atp-dependent type isp restriction-modification enzyme llabiii bound2 to dna


Added to library: Sat Sep 19 09:02:10 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QTFDDLINQIGTLFEKLTLAYLKNEPTYKALYQNVWLLSEVDLVAEQKNGDLVAIQAKFYTNKKSEINSF
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Known secondary structure (DSSP)



SSS



TTS







 .........80.........90.........100.........110.........120.........130.........140
Sequence VAELGKSYYQRGLIVSTMDDWNSNARETIEIIGLSDLRNSQIDWSQFNFPENVVVKKPKKLRDYQQTAKE
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Known secondary structure (DSSP)

SSSB






S





TSSB
STT







B






 .........150.........160.........170.........180.........190.........200.........210
Sequence NALAHFKENDRGQLIMAPGTGKTFTSLKISEALSKDKDGPFKVLYLVPSIQLLTQTLRGWNNDTELTMTS
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Known secondary structure (DSSP) TT
S
TTS
T
S
SS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence MAVTTEDIKASDIGYPATTSSKKILQNWHDFESLPKQTDMLVVFSTYQSIEVIGEAQKEGFPEFDFIISD
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Known secondary structure (DSSP)






GGGG
S



SSSS

SGGGT


BS
 .........290.........300.........310.........320.........330.........340.........350
Sequence EAHRTTGAHEAAKEASAFSKVHSNNNVKGLKRMYQTATPKIYGESAKKNAKDKSILLSSMDDESKYGEVF
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Known secondary structure (DSSP) TGGGTTSSS

TTTSTT
TTTS
BS
S
SS

SSTT
S






TTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence FRMGFGQAVSRDILTDYKVMVLAVDEAAIQKDMQRTLADPENGLNIDDVGRIVGIWNGMMRRNGYPYDGA
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Known secondary structure (DSSP)
TTSS

TTTSSS

TB
B

BSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence PLERAIAFTRTIEESKKVSSQFEEVVNESIHLSMRHADGQMNALQKGEVLDWLANPNKPADEARIVSNVR
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Known secondary structure (DSSP)



S





B

B

TTS

S


TT

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence FLTEGIDIPTLDAVIFLSPKKSQVDIVQAVGRIMRKAEGKDYGYIILPIVIPTGEKPETILDNNKNYETV
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Known secondary structure (DSSP) SSSSS


TT


S

S
TT
S

TT





TT

TTTSS
S
STT
 .........570.........580.........590.........600.........610.........620.........630
Sequence WQVINALRSVDERFEAMIDKLNMAKPKQLKVIGVGSSTELEFEWDKFEGAIFGKIVQKVGDRKYLENWSK
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Known secondary structure (DSSP)
TTTTS

SS




SSTTS



 .........640.........650.........660.........670.........680.........690.........700
Sequence DVAKIAERQINWIKNKLSDKKDPISLEFKKFVSSLQHNINDSIDEKQAAEMLSQHLITKPIFEALFSEYS
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Known secondary structure (DSSP) SS
SS
TT

TTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence FVNQNPVSQAMESIVSELEKAGFAKEQENLEPLYESVRMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATT
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Known secondary structure (DSSP) SS


TTT



TGGGTT


TGGGT
 .........780.........790.........800.........810.........820.........830.........840
Sequence ERLGIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDAGEISLAD
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Known secondary structure (DSSP) S







SS

SSSTT
TT
TTSTSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence ITRKFMKELHANEIVLLSYYIAAINIESTFDEINGDEEGYVPFEGIVLTDTFESTETEDTLDDDYFGTND
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Known secondary structure (DSSP) TSSSGGG





TTS
TS




SS
TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence ERLKRQQKVPITVIMGNPPYSAKQKNEDGNQIRTTYEKLDASLQNSWVETSTATNKNNLFDSYIRAMRWS
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Known secondary structure (DSSP) TS





SS
S
GGG






TTTT


S

GGGG
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SDRISDNGVIGFITNNSFIDGNAMDGMRQSLLEEFSDIYVLNLKGGIRGKTKDQSALEGGNIFDIMTGVT
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Known secondary structure (DSSP) TTST
GGG
S


TT




SSSSSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IIMLIKKSDYTVEGRIHYLDIGNNLDKYQKLEKLKNWKSLNGATSEFQNIIPNEKGDWINQRNSNFDELI
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Known secondary structure (DSSP)
TT

S



SS


STTT



SS

SSS


TTGGGS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence SLGNKKGSDSLFIDYTGGLKTGRDNWSWNFSKEQVELSMKSSIDYYNQYLGDTNIYKEDVPDISWTRSLK
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Known secondary structure (DSSP) S

SS
S
SSBS


BB
S

BS
TTT
GGGGG


TT



 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence QRFERRETQSWQGERMYLGMYRPFTKKHVYYAQAWIDRQYQMTKVLPSSTSSNLMISLSNKTGGKQFSTL
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Known secondary structure (DSSP) TT





GGGTT

GGG
SB
TT
SSTT



S

TTS



 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence IVDVLPDVNLFTGGSQNLPKYLYRNNDTGNLNSEKYSAIRHEVLNKLPNLSEEDAMYYVYGLFHSIQYGK
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Known secondary structure (DSSP) SSBTTSSTTSS
S





B
TSTT

GGGT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence VYYEDLAKSFPKIPNVKHKEKYIKIGKELADLHLNYENQPICEGIDVQISELNYRVKKMKHPKKGVLDTI
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Known secondary structure (DSSP) TTSS




S
T
SS



SS
SSS



SB
B
SSTT

S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence IYNESITIKNIPEKAYEYVVNGRPAIEWIINQYQVKTDKKSGITDDPNEFSDDPKYILNLLLSVITVSMR
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Known secondary structure (DSSP)
SSS


GGGGG
TTSB

TTT


SSTT
 .........1480....
Sequence TLELIDELPEFEIQ
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Known secondary structure (DSSP) SS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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