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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4xmnB_

Fold library idPDB HeaderMoleculeTitle
c4xmnB_PDB header: protein transportChain: B: PDB Molecule: nucleoporin nup145;PDBTitle: structure of the yeast coat nucleoporin complex with a synthetic2 antibody


Added to library: Sat Mar 28 08:21:47 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YTFAKFSTGSXLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKSNPYPQISESSLLF
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SSS

SSSSSS







GGGGSTT
SSSS



 .........80.........90.........100.........110.........120.........130.........140
Sequence KDALDYXEKTSSDYNLWKLSSILFDPVSYPYKTDNDQVKXALLKKERHCRLTSWIVSQIGPEIEEKIRNS
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Known secondary structure (DSSP) GGGS
TTSS




S

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence SNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNISKI
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Known secondary structure (DSSP)

TT
TT
TTTTS

TTT
S


 .........220.........230.........240.........250.........260.........270.........280
Sequence YKLLSGSPFEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDDPIGVIFQLYAA
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Known secondary structure (DSSP) TT
SSSSSS
GGGGGGTS
STTTTTS
TT



TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFL
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Known secondary structure (DSSP) GGG

SS
TSS



TT
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence NDDKAAEDTIKRLVXREITLLRASTNDHILNRLKIPSQLIFNAQALKDRYEGSEVQNLLDLAEXAIVTSL
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Known secondary structure (DSSP) S
TTTTSSSTTT






 .........430.........440.........450.........460.........470.........480.........490
Sequence VQNNELKTLREILNEFVSINVFEVYLKLVQETIDSLISGXKIFYVAACCNVXSQEIVSKILEKNKAKLLE
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Known secondary structure (DSSP)








 .........500...
Sequence LPLQDLXKCTYKI
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Known secondary structure (DSSP) TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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