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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4xmmE_

Fold library idPDB HeaderMoleculeTitle
c4xmmE_PDB header: transport protein/immune systemChain: E: PDB Molecule: nucleoporin nup120;PDBTitle: structure of the yeast coat nucleoporin complex


Added to library: Sat Mar 28 08:20:30 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ACLSRIDANLLQYYEKPEPNNTVDLYVSGSEYSNCLLLSNSEYICYHFSSRSTLLTFYPLSDAYHGKTIN
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Known secondary structure (DSSP)

TTTTSS
SS
S




S
TTS

TTS
GGGTTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence IHLPNASMNQRYTLTIQEVEQQLLVNVILKDGSFLTLQLPLSFLFSSANTLNGEWFHLQNPYDFTVRVPH
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Known secondary structure (DSSP)
SS
BTTGGGG
SSBTTS
TSS
S


S





S
TTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FLFYVSPQFSVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKSLTRFFSRSSKSDYDSVISCKLFHERYL
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Known secondary structure (DSSP)
SSSTTS
SSSS






GGGGGGSTT

SS
SS



TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence IVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMGTLL
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Known secondary structure (DSSP) TT
TTTTGGGSS


SS





S



SSS
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VLTYTFQNNIPTNLSASAIWSIVDLVLTRPLELNVEASYLNLIVLWKSGTASKLQILNVNDESFKNYEWI
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TT


S



S
S

STT
SSSTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ESVNKSLVDLQSEHDLDIVTKTGDVERGFCNLKSRYGTQIFERAQQILSENKIIMAHNEDEEYLANLETI
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Known secondary structure (DSSP)
T


SS

S

TT



STT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LRDVKTAFNEASSITLYGDEIILVNCFQPYNHSLYKLNTTVENWFYNMHSETDGSELFKYLRTLNGFAST
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Known secondary structure (DSSP) T
TTTSSTT

TTTT
SS

TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LSNDVLRSISKKFLDIITGELPDSMTTVEKFTDIFKNCLENQFEITNLKILFDELNSFDIPVVLNDLINN
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Known secondary structure (DSSP) S
TSS
TTS
TTTSS
TS
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence QMKPGIFWKKDFISAIKFDGFTSIISLESLHQLLSIHYRITLQVLLTFVLFDLDTEIFGQHISTLLDLHY
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Known secondary structure (DSSP) TTS



S




B
SS

S


TTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence KQFLLLNLYRQDKCLLAEVLLKDSSEFSFGVKFFNYGQLIAYIDSLNSNVYNTENSFFMTFFRSSHKNIR
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Known secondary structure (DSSP)
SSSSTTSS
B


S



TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence FFLENVECEVQEFMFAMTLFSFDQSYEIFQLHDIWKDLLCTFTVPHSAFYYQLSLLFDQEFALKCISKSA
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 .........780.........790.........800.........810.........820.........830.........840
Sequence EYSLQDFKEKQHIHYLNLLIHFEVLDVLRLGHECRTNFLQLLLQEDIDFFSTLLRLCNAHSDKIVDSILS
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 .........850.........860.........870.........880.........890......
Sequence QNLRSCFKKLYCFRMLNAAAEVLYQYILMIRKRKCYLMVINVLSVTLTDLRDELRG
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Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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