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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4xmmD_

Fold library idPDB HeaderMoleculeTitle
c4xmmD_PDB header: transport protein/immune systemChain: D: PDB Molecule: nucleoporin nup85;PDBTitle: structure of the yeast coat nucleoporin complex


Added to library: Sat Mar 28 08:15:43 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ILVPMTVNDQPIEKNGDKMPLKFKLGPLSYQNMAFITAKDKYKLYPVRIPRLDTSKEFSAYVSGLFEIYR
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S
SS

S

SSTT


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STT





SS



 .........80.........90.........100.........110.........120.........130.........140
Sequence DLGDDRVFNVVNSNFAKEHNATVNLAMEAILNELEVFIGRVKDQDGRVNRFYELEESLTVLNCLRTMYFI
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Known secondary structure (DSSP) TGGGGS




SS
S

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LDGQDVEENRSEFIESLLNWINRSDGEPDEEYIEQVFSVAGKKVFETQYFWKLLNQLVLRGLLSQAIGCI
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Known secondary structure (DSSP) STTS
GGG



S
TT


SSSS
STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence ERSDLLPYLSDTCAVSFDAVSDSIELLKQYPKDSSSTFREWKNLVLKLSQAFGSSATDISGELRDYIEDF
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Known secondary structure (DSSP) TTTTTTT
T

SS
TS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence LLVIGGNQRKILQYSRTWYESFCGFLLYYIPSLELSAEYLQMSLEANVVDITNDWEQPCVDIISGKIHSI
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Known secondary structure (DSSP) T
T
SST


GGGS


TTSSSTT


S
 .........360.........370.........380.........390.........400.........410.........420
Sequence LPVMESLDSCTAAFTAMICEAKGLIENIFEGLEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLI
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Known secondary structure (DSSP)
TSS








SSSSSS
TS

TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence ALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNIESIANFSLVKSYSW
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Known secondary structure (DSSP)
SSS
GGG



ST




 .........500.........510.........520.........530.........540.........550.........560
Sequence LLFEASCMEGQKVLNAIVSKDDVIIPQDILVTNSMRQTLAPYAVLSQFYDREDWGQALRLLLLLIEFHYL
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TT





 .........570.........580.........590.........600.........610.........620
Sequence VLLVAKFLYPIFEDSVATVIEVIETKWSNLYETIIEADKSATLLKNLRKKLNFKLCQAFM
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Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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