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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4xjnM_

Fold library idPDB HeaderMoleculeTitle
c4xjnM_PDB header: viral protein/rnaChain: M: PDB Molecule: nucleocapsid;PDBTitle: structure of the parainfluenza virus 5 nucleocapsid-rna complex: an2 insight into paramyxovirus polymerase activity


Added to library: Sat Mar 21 08:18:12 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SVLKAYERFTLTQELQDQSEEGTIPPTTLKPVIRVFILTSNNPELRSRLLLFCLRIVLSNGARDSHRFGA
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Known secondary structure (DSSP)
TTTTS













B





SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence LLTMFSLPSATMLNHVKLADQSPEADIERVEIDGFEEGSFRLIPNARSGMSRGEINAYAALAEDLPDTLN
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Known secondary structure (DSSP) TTSSSTTGGGSTT



B

TTTT

TTS


TT


TTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence HATPFVDSEVEGTAWDEIETFLDMCYSVLMQAWIVTCKCMQPAASIEKRLQKYRQQGRINPRYLLQPEAR
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Known secondary structure (DSSP) TTSSSSSTTGGG



STTT





TTSS
GGG


 .........220.........230.........240.........250.........260.........270.........280
Sequence RIIQNVIRKGMVVRHFLTFELQLARAQSLVSNRYYAMVGDVGKYIENCGMGGFFLTLKYALGTRWPTLAL
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Known secondary structure (DSSP)
T

SS

TTTT


GGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence AAFSGELTKLKSLMALYQTLGEQARYLALLESPHLMDFAAANYPLLYSYAMGIGYVLDVNMRNYAFSRSY
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Known secondary structure (DSSP) STT
GGGGGT
GGGGTT
GGGS
GGGGGS



TT
 .........360.........370.........380.........390.....
Sequence MNKTYFQLGMETARKQQGAVDMRMAEDLGLTQAERTEMANTLAKL
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Known secondary structure (DSSP)

SSS


TT

TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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