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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4xhiB_

Fold library idPDB HeaderMoleculeTitle
c4xhiB_PDB header: transcriptionChain: B: PDB Molecule: rna-dependent rna polymerase;PDBTitle: crystal structure of native thosea asigna virus rna-dependent rna2 polymerase (rdrp) at 2.15 angstrom resolution


Added to library: Sat Nov 7 08:17:09 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PTRLSLEAMLAERAMVARQDLAGLKRKLAGADRVLAPQSPEQCGRESAQAQARSVTSELKSAVKEAQGLE
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Known secondary structure (DSSP)

SS
TT
TTT











S
TS
 .........80.........90.........100.........110.........120.........130.........140
Sequence HQTLDFLEQLGEYPVCGILHGDHPVHPSGTHNNNGKVSVKRQFAAGVNTSDALTCAFRFEDSDLVRETAL
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Known secondary structure (DSSP)



TTS

B



TTSS
TTSSTT
B







B
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KTTYTDGTWAGFVQRLKMQTTRKCVQEKVSRKLLKQLFPYDPQKLVDVSGELSELVLGIKTNAIASAGPP
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Known secondary structure (DSSP)


S








S
B
GGGS

TTS
TT



TTSB

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence YWRTKRDALPDMLDCVLPLLYDHIVRKDLTTLRNKHPELFLAECKNKTDRYEVESLGEKTRPYFSHPFHL
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Known secondary structure (DSSP) T
SBTTT

GGGG


GGGTTT




 .........290.........300.........310.........320.........330.........340.........350
Sequence SALVSVLSQSFSGALKIMTEDSTSFNAYGFSWTNGGAEDLAIWARQAGEAGKKPPRIACYGDDTDIYYRK
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Known secondary structure (DSSP) B

TTT
TT

B
TT

STTTT

BTTTS

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence DGKLYRICPDFKQMDGSVDATTIEAVVDYVVDAHVKQYPTARQFWEEVGKLWVEMATQSPFLIDGTKVYR
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Known secondary structure (DSSP) TT

BBSSGGGG


GGGT


SBS
 .........430.........440.........450.........460.........470.........480.........490
Sequence KMQKDGLMTGVVGTTLFDTVKSALAYNDWADQLMFGSLNLLEEKYAIEFFKNKHGLVIKEGTWKPALVNE
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Known secondary structure (DSSP)
SSS
S

TTSTTTT
GGGGS


B
TT





S
 .........500.........510.........520.........530.........540.........550.........560
Sequence DPGFGELWTEQKFLGLQLKVVRRENEKVYVPNLPFEDWLTMWVTPRSKYRSKETETMRERTLFDRARGLL
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Known secondary structure (DSSP) S

TT
BS
S

BTTBTT

S
S
B

SS

 .........570.........580.........590.........600.........610.........620.........630
Sequence VTGAVFDERARGLMGAVINSTAPEVVCMRVQEGGGRGAPPAYAFLTRDGVFEFPISDGYPSYDWVVSLYS
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Known secondary structure (DSSP) TGGGSTS
S


GGGGT



S
S
SSTT




S
TTB


S
 .........640.........650.........660....
Sequence RDHPCDMPRVFPEAATLIASYRKQVMDTRVVIKE
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Known secondary structure (DSSP) SS





BSSTTT






SS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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