PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4xhfD_

Fold library id	PDB Header	Molecule	Title
c4xhfD_	PDB header: oxidoreductase	Chain: D: PDB Molecule: na-translocating nadh-quinone reductase subunit c nqrc;	PDBTitle: crystal structure of shewanella oneidensis nqrc

Links to external resources
Added to library: Sat Dec 19 08:21:55 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K L A K K R D E L Q R Y V L M A A D V N L G Q G N E F R D I F A K S V K P L L I N L D T G K V D S D A N V L D F D E R M A A I N P E T S S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S G G G T T T
S
S T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P K K D I A K I K T R A N D A R V F K V F D D S G K L S S V V V P F Y G K G L W S M I Y G Y V A V E P D F N T I K G V V V Y E H G E T P G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S
S
T T S
S S S
T T S S B
S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G D F V T D P H W L S L W K G K Q L F D D K G K F A M R L V K G G V K E G D I H G V D A V S G A T M T G R G V Q R A M E F W F G V E G F Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G
G G G T T
B S B
T T S
B
S S
T T
T T
T T
T S T T T T

. . . . . . . . .

Sequence F F N Q L K A S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	L	A	K	K	R	D	E	L	Q	R	Y	V	L	M	A	A	D	V	N	L	G	Q	G	N	E	F	R	D	I	F	A	K	S	V	K	P	L	L	I	N	L	D	T	G	K	V	D	S	D	A	N	V	L	D	F	D	E	R	M	A	A	I	N	P	E	T	S	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T					S	G	G	G																T	T	T							S		S	T	T										G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	K	K	D	I	A	K	I	K	T	R	A	N	D	A	R	V	F	K	V	F	D	D	S	G	K	L	S	S	V	V	V	P	F	Y	G	K	G	L	W	S	M	I	Y	G	Y	V	A	V	E	P	D	F	N	T	I	K	G	V	V	V	Y	E	H	G	E	T	P	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S		T	T			S				S										T	T	S														S	S	S										T	T	S	S	B											S		T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	D	F	V	T	D	P	H	W	L	S	L	W	K	G	K	Q	L	F	D	D	K	G	K	F	A	M	R	L	V	K	G	G	V	K	E	G	D	I	H	G	V	D	A	V	S	G	A	T	M	T	G	R	G	V	Q	R	A	M	E	F	W	F	G	V	E	G	F	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	G						G	G	G	T	T		B	S	B		T	T	S		B						S	S				T	T		T	T						T	T																T	S	T	T	T	T
	.	.	.	.	.	.	.	.	.
Sequence	F	F	N	Q	L	K	A	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)