PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4xd9A_

Fold library id	PDB Header	Molecule	Title
c4xd9A_	PDB header: translation	Chain: A: PDB Molecule: ribosome biogenesis protein, putative (afu_orthologue	PDBTitle: structure of rpf2-rrs1 complex involved in ribosome biogenesis

Links to external resources
Added to library: Sat Jun 13 08:23:42 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K E P Q L I E G A K R V L L L H G S K C P T P L H T V L K V F H S L T T P H S V L F H K K N E N I H P F E S T E S L E F L A N K N D C G M V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T
T T T S
S
T T T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I F G S S N K K R P N C L T I A R I F D S K V L D M A E L L L L P D A N G E G I P E M N R L S M H V A I G L R P L M L F S G S A W D D T T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S T T
S S S S
S S S
T T S
T T
S S G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T T H T M L K S M L V D L F K G E T S D K I D V E G L Q Y A L M V G A E E P T A G L A P I I H L R W Y K I V T K R S G H K L P R V E L E E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
G G G
T T S
S S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . .

Sequence G P K L D F K V G R I Q E A P R D V M K E A M K Q G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	E	P	Q	L	I	E	G	A	K	R	V	L	L	L	H	G	S	K	C	P	T	P	L	H	T	V	L	K	V	F	H	S	L	T	T	P	H	S	V	L	F	H	K	K	N	E	N	I	H	P	F	E	S	T	E	S	L	E	F	L	A	N	K	N	D	C	G	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S			S									T	T																T	T	T	S										S			T	T	T												T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	F	G	S	S	N	K	K	R	P	N	C	L	T	I	A	R	I	F	D	S	K	V	L	D	M	A	E	L	L	L	L	P	D	A	N	G	E	G	I	P	E	M	N	R	L	S	M	H	V	A	I	G	L	R	P	L	M	L	F	S	G	S	A	W	D	D	T	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	S		S									T	T														S	S	S	S						S	S	S		T	T	S		T	T									S	S	G	G	G		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	T	H	T	M	L	K	S	M	L	V	D	L	F	K	G	E	T	S	D	K	I	D	V	E	G	L	Q	Y	A	L	M	V	G	A	E	E	P	T	A	G	L	A	P	I	I	H	L	R	W	Y	K	I	V	T	K	R	S	G	H	K	L	P	R	V	E	L	E	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S			S				G	G	G														T	T	S																	S	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Sequence	G	P	K	L	D	F	K	V	G	R	I	Q	E	A	P	R	D	V	M	K	E	A	M	K	Q	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							T