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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4wzwA_

Fold library idPDB HeaderMoleculeTitle
c4wzwA_PDB header: dna binding protein, rna binding proteinChain: A: PDB Molecule: pumilio domain-containing protein kiaa0020;PDBTitle: crystal structure of human puf-a in complex with dna


Added to library: Sat Jan 3 08:16:15 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KTNYDIVVRAKQMWEILRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQA
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Known secondary structure (DSSP)

TSSS

TT
STTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence FEELRDDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQR
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Known secondary structure (DSSP) TTTT
STTTS
TTTTT
T

 .........150.........160.........170.........180.........190.........200.........210
Sequence NMLTEELYGNTFQLYKSADHPTLDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTY
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Known secondary structure (DSSP) TGGGG

SS

S
GGGT
TTTTTSTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence APPKLRSEMIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAF
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Known secondary structure (DSSP)

TTSGGGTTTSSS
TTTTTTSTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence DCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVR
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Known secondary structure (DSSP)
S
TTSTTSTT
TTTS
GGGTT
SS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence RRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIASLAATGLHPLHIAEHPAG
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Known secondary structure (DSSP) T
TTTTTT

S

TTSS





TTTSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence HLVLKWLIEQDKKMKENGREGCFAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSCDLEVANKVKAALKS
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Known secondary structure (DSSP) TT




GGGST
S
SGG
 .........500.....
Sequence LIPTLEKGIEILLEK
Predicted secondary structure

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Known secondary structure (DSSP) GGGG


T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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