PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4wutA_

Fold library id	PDB Header	Molecule	Title
c4wutA_	PDB header: transport protein	Chain: A: PDB Molecule: abc transporter substrate binding protein (ribose);	PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220)3 with bound d-fucose

Links to external resources
Added to library: Sat Dec 20 10:11:38 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G E I A V I V K T V N S T F W Q N V Q K G A D A A I G K Q K A H T I T F Q G P A A E S A I A D Q V N X V E N A V N R K V D A I L L A P S D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T T
S S
S S T T
T T
S
S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D A L V P A V K K A W E A R I P V V I I D S X L S K D A E K Y Y Q A F L A T D N K A A G E L A A K A X I Q K V G T E G K I A V X S Y V A G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
S S
G G G G G G
S
S S S S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G S E I G R V G G F T D Y I K A N S K L Q I V G P Y Y S Q S Q X A T A L N Q T T D V L A A N A D L K G I F G A N E P T A I G X G R A I K Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G K A G K L V A I G F D G N Q D L Q E F V K D G T L E A T V V Q G S Y Q X G E K G V D T L L K L L S K E K V E K F I D T G V V V V T K Q N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S S
S T T S
S
T T
S
T T T T

. . . . . . . . . 290

Sequence D K P E A K N V L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	E	I	A	V	I	V	K	T	V	N	S	T	F	W	Q	N	V	Q	K	G	A	D	A	A	I	G	K	Q	K	A	H	T	I	T	F	Q	G	P	A	A	E	S	A	I	A	D	Q	V	N	X	V	E	N	A	V	N	R	K	V	D	A	I	L	L	A	P	S	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		S	S																T	T		S	S									S	S	T	T															T	T		S							S	S	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	A	L	V	P	A	V	K	K	A	W	E	A	R	I	P	V	V	I	I	D	S	X	L	S	K	D	A	E	K	Y	Y	Q	A	F	L	A	T	D	N	K	A	A	G	E	L	A	A	K	A	X	I	Q	K	V	G	T	E	G	K	I	A	V	X	S	Y	V	A	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T										T	T							S	S				G	G	G	G	G	G		S																								S	S	S							S	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	S	E	I	G	R	V	G	G	F	T	D	Y	I	K	A	N	S	K	L	Q	I	V	G	P	Y	Y	S	Q	S	Q	X	A	T	A	L	N	Q	T	T	D	V	L	A	A	N	A	D	L	K	G	I	F	G	A	N	E	P	T	A	I	G	X	G	R	A	I	K	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T	T																	T	T								S														T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	K	A	G	K	L	V	A	I	G	F	D	G	N	Q	D	L	Q	E	F	V	K	D	G	T	L	E	A	T	V	V	Q	G	S	Y	Q	X	G	E	K	G	V	D	T	L	L	K	L	L	S	K	E	K	V	E	K	F	I	D	T	G	V	V	V	V	T	K	Q	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		T	T	S	S								S									T	T	S		S																							T	T					S											T	T	T	T
	.	.	.	.	.	.	.	.	.	290
Sequence	D	K	P	E	A	K	N	V	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S					T	T