PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4wt7B_

Fold library id	PDB Header	Molecule	Title
c4wt7B_	PDB header: transport protein	Chain: B: PDB Molecule: abc transporter substrate binding protein (ribose);	PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from agrobacterium vitis (avi_5165, target efi-511223)3 with bound allitol

Links to external resources
Added to library: Sat Nov 15 09:11:30 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S L K G K R I G I S T A G T D H F F D L Q A Y N A Q I A E V K R L G G E P L A V D A G R S D G K L V A Q L Q T L I A Q K P D A I V Q L L G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S T T
T T
T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L T V I D P W L K R A R D A G I P V L T I D V G S S H S L N N S T S D N W G I G K D L A L Q L V S D I G G E G N V V V F N G F Y G V T P C A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S
T T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I R Y D Q L V N V I K Y F P K V K I I Q P E L R D V I P N T V Q D A F A Q V T A I L N K Y P E K G S I K A I W S A W D I P Q L G A T Q A L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S S
B
S S S S
S T T S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A A G R T E I K T Y G V D G S P E V L Q L V A D P A S P A A A D V A Q Q P A E L G R Q A I Q N V A L L L S G K T L P R E S Y V P A L L A N K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S
T T S S
T T
S
T

. . . . . . . . . 290

Sequence Q T V N E V T R K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	L	K	G	K	R	I	G	I	S	T	A	G	T	D	H	F	F	D	L	Q	A	Y	N	A	Q	I	A	E	V	K	R	L	G	G	E	P	L	A	V	D	A	G	R	S	D	G	K	L	V	A	Q	L	Q	T	L	I	A	Q	K	P	D	A	I	V	Q	L	L	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T								S			S	S																	T	T									T	T															T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	T	V	I	D	P	W	L	K	R	A	R	D	A	G	I	P	V	L	T	I	D	V	G	S	S	H	S	L	N	N	S	T	S	D	N	W	G	I	G	K	D	L	A	L	Q	L	V	S	D	I	G	G	E	G	N	V	V	V	F	N	G	F	Y	G	V	T	P	C	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T							S				T	T		S																						T	T	T											T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	R	Y	D	Q	L	V	N	V	I	K	Y	F	P	K	V	K	I	I	Q	P	E	L	R	D	V	I	P	N	T	V	Q	D	A	F	A	Q	V	T	A	I	L	N	K	Y	P	E	K	G	S	I	K	A	I	W	S	A	W	D	I	P	Q	L	G	A	T	Q	A	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T		T	T					S	S		B				S	S	S																S		S	T	T	S							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	A	G	R	T	E	I	K	T	Y	G	V	D	G	S	P	E	V	L	Q	L	V	A	D	P	A	S	P	A	A	A	D	V	A	Q	Q	P	A	E	L	G	R	Q	A	I	Q	N	V	A	L	L	L	S	G	K	T	L	P	R	E	S	Y	V	P	A	L	L	A	N	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T		T	T	S																		T	T	S	S																									T	T					S											T
	.	.	.	.	.	.	.	.	.	290
Sequence	Q	T	V	N	E	V	T	R	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T						T	T