PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4wslA_

Fold library id	PDB Header	Molecule	Title
c4wslA_	PDB header: de novo protein	Chain: A: PDB Molecule: pentatricopeptide repeat protein;	PDBTitle: crystal structure of designed cppr-polyc protein

Links to external resources
Added to library: Sat Dec 27 09:32:59 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G N S V T Y N T L I S G L G K A G R L E E A L E L F E E M K E K G I V P S V V T Y N T L I S G L G K A G R L E E A L E L F E E M K E K G I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
T T T T T
T S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P S V V T Y N T L I S G L G K A G R L E E A L E L F E E M K E K G I V P S V V T Y N T L I S G L G K A G R L E E A L E L F E E M K E K G I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
T S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P S V V T Y N T L I S G L G K A G R L E E A L E L F E E M K E K G I V P S V V T Y N T L I S G L G K A G R L E E A L E L F E E M K E K G I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
T T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence P S V V T Y N T L I S G L G K A G R L E E A L E L F E E M K E K G I V P S V V T Y N T L I S G L G K A G R L E E A L E L F E E M K E K G I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T
T T S
T T T

. . . . . . . . . 290 . . .

Sequence P S V V T Y N T L I S G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	N	S	V	T	Y	N	T	L	I	S	G	L	G	K	A	G	R	L	E	E	A	L	E	L	F	E	E	M	K	E	K	G	I	V	P	S	V	V	T	Y	N	T	L	I	S	G	L	G	K	A	G	R	L	E	E	A	L	E	L	F	E	E	M	K	E	K	G	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S														T												T	T	T	T	T																		T	S														T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	S	V	V	T	Y	N	T	L	I	S	G	L	G	K	A	G	R	L	E	E	A	L	E	L	F	E	E	M	K	E	K	G	I	V	P	S	V	V	T	Y	N	T	L	I	S	G	L	G	K	A	G	R	L	E	E	A	L	E	L	F	E	E	M	K	E	K	G	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T													T	T															T	T																		T	S															T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	S	V	V	T	Y	N	T	L	I	S	G	L	G	K	A	G	R	L	E	E	A	L	E	L	F	E	E	M	K	E	K	G	I	V	P	S	V	V	T	Y	N	T	L	I	S	G	L	G	K	A	G	R	L	E	E	A	L	E	L	F	E	E	M	K	E	K	G	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T		T														T																		T	T														T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	P	S	V	V	T	Y	N	T	L	I	S	G	L	G	K	A	G	R	L	E	E	A	L	E	L	F	E	E	M	K	E	K	G	I	V	P	S	V	V	T	Y	N	T	L	I	S	G	L	G	K	A	G	R	L	E	E	A	L	E	L	F	E	E	M	K	E	K	G	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T														T	T	T																T	T	S			T												T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.
Sequence	P	S	V	V	T	Y	N	T	L	I	S	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T