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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4wrtA_

Fold library idPDB HeaderMoleculeTitle
c4wrtA_PDB header: transferase/rnaChain: A: PDB Molecule: pa;PDBTitle: crystal structure of influenza b polymerase with bound vrna promoter2 (form flub2)


Added to library: Sat Nov 22 08:14:30 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SMDTFITRNFQTTIIQKAKNTMAEFSEDPELQPAMLFNICVHLEVCYVISDMNFLDEEGKAYTANLRPQY
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Known secondary structure (DSSP)
S
TT

TTT
T
TTS




BS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EVIEGMPRTIAWMVQRSLAQEHGIETPKYLADLFDYKTKRFIEVGITKGLADDYFWKKKEKLGNSMELMI
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Known secondary structure (DSSP)
TTS
TT



SS

STTTTSS
TTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FSYNQDYSLSNESSLDEEGKGRVLSRLTELQAELSLKNLWQVLIGEEDVEKGIDFKLGQTISRLRDISVP
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Known secondary structure (DSSP) TTS

TT



TT
S












TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AGFSNFEGMRSYIDNIDPKGAIERNLARMSPLVSVTPKKLTWEDLRPIGPHIYNHELPEVPYNAFLLMSD
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Known secondary structure (DSSP) TT
SS


TTS
TT






GGG


S
GGGG
TTS
B




SS
STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence ELGLANMTEGKSKKPKTLAKECLEKYSTLRDQTDPILIMKSEKANENFLWKLWRDCVNTISNEEMSNELQ
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Known secondary structure (DSSP)


SS



TT

S


TT

SS
S


 .........360.........370.........380.........390.........400.........410.........420
Sequence KTNYAKWATGDGLTYQKIMKEVAIDDETMCQEEPKIPNKCRVAAWVQTEMNLLSTLTSKRALDLPEIGPD
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Known secondary structure (DSSP)

TTTT
S





TT











B

TSB
S
B









 .........430.........440.........450.........460.........470.........480.........490
Sequence VAPVEHVGSERRKYFVNEINYCKASTVMMKYVLFHTSLLNESNASMGKYKVIPITNRVVNEKGESFDMLY
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Known secondary structure (DSSP)
STBTTTS
TT

 .........500.........510.........520.........530.........540.........550.........560
Sequence GLAVKGQSHLRGDTDVVTVVTFEFSSTDPRVDSGKWPKYTVFRIGSLFVSGREKSVYLYCRVNGTNKIQM
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STT
S

TTTTGGG
TT
SSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KWGMEARRCLLQSMQQMEAIVEQESSIQGYDMTKACFKGDRVNSPKTFSIGTQEGKLVKGSFGKALRVIF
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Known secondary structure (DSSP) TGGGTS

T

SS



TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence TKCLMHYVFGNAQLEGFSAESRRLLLLIQALKDRKGPWVFDLEGMYSGIEECISNNPWVIQSAYWFNEWL
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Known secondary structure (DSSP) T
STT


S
TT
SS
 .........
Sequence GFEKEGSKV
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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