PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4wr2A_

Fold library id	PDB Header	Molecule	Title
c4wr2A_	PDB header: hydrolase	Chain: A: PDB Molecule: pyrimidine-specific ribonucleoside hydrolase riha;	PDBTitle: crystal structure of a putative pyrimidine-specific ribonucleoside2 hydrolase (riha) protein from shewanella loihica pv-4 (shew_0697,3 target psi-029635) with divalent cation and peg 400 bound at the4 active site

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Added to library: Sat Nov 15 08:18:31 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K A I R P L A S A T P I I L D C D P G H D D A I S L I L A L S S E R L N P L A V T T S A G N Q T P D K T L N N A L R I L T L L N R A D X P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T
T T
S S S
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A G G A V K P L A R E L I I A G P K L P D P S F D P L T Q N A I E L X A E K V R Q S A V P V T L V P S G P L T N I A L F I A N Y P E L H S K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S
S S
S
S S
S
S
G G G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V E R I V L X G G A A G V G N W T P A A E F N I F V D P E A A D X V F K S G I P I T X C G L D V T H E A Q I X D E D I E R I R A I P N P V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S S S
S
S
T T
T S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Q C V A E L L D F F X I Y H R D P K W G F T G A P L H D P C T I A W L L K P E L F T A Q E C W V G V E T K G E Y T Q G X T V V D R Y Q L T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
S S
T
G G G
S
S S
T T
T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . .

Sequence K T A N A T V L F D L D R Q G F V D L I V D C L S A Y N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G

Download: PDB structure FASTA sequence
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	A	I	R	P	L	A	S	A	T	P	I	I	L	D	C	D	P	G	H	D	D	A	I	S	L	I	L	A	L	S	S	E	R	L	N	P	L	A	V	T	T	S	A	G	N	Q	T	P	D	K	T	L	N	N	A	L	R	I	L	T	L	L	N	R	A	D	X	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T											S											T	T		T	T											S	S	S																T	T		T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	G	G	A	V	K	P	L	A	R	E	L	I	I	A	G	P	K	L	P	D	P	S	F	D	P	L	T	Q	N	A	I	E	L	X	A	E	K	V	R	Q	S	A	V	P	V	T	L	V	P	S	G	P	L	T	N	I	A	L	F	I	A	N	Y	P	E	L	H	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S		S	S	S													S	S					S														S	S								S		S											G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	E	R	I	V	L	X	G	G	A	A	G	V	G	N	W	T	P	A	A	E	F	N	I	F	V	D	P	E	A	A	D	X	V	F	K	S	G	I	P	I	T	X	C	G	L	D	V	T	H	E	A	Q	I	X	D	E	D	I	E	R	I	R	A	I	P	N	P	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S			S	S	S	S	S																		S		S											T	T													T	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Q	C	V	A	E	L	L	D	F	F	X	I	Y	H	R	D	P	K	W	G	F	T	G	A	P	L	H	D	P	C	T	I	A	W	L	L	K	P	E	L	F	T	A	Q	E	C	W	V	G	V	E	T	K	G	E	Y	T	Q	G	X	T	V	V	D	R	Y	Q	L	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S			G	G	G			S	S					T										G	G	G													S		S	S		T	T						T	T			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Sequence	K	T	A	N	A	T	V	L	F	D	L	D	R	Q	G	F	V	D	L	I	V	D	C	L	S	A	Y	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									G	G	G