Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4wqsD_

Fold library idPDB HeaderMoleculeTitle
c4wqsD_PDB header: transferase/dna/rnaChain: D: PDB Molecule: dna-directed rna polymerase subunit beta';PDBTitle: thermus thermophilus rna polymerase backtracked complex


Added to library: Sat Feb 21 08:30:00 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGK
Predicted secondary structure

















































SS confidence





































































Known secondary structure (DSSP)











S


B
TTSSSB
SSSTT


SSSS

SS
S

SSTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAI
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)

SSS



SSS

SSSS
TTTTTTTS
TTSS



S


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LNGVPVEKRQLLTDEEYRELRYARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRA
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)
SSSS

SS

S

T

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence FLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEK
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)


GGGG

TTTS

STT

T


 .........290.........300.........310.........320.........330.........340.........350
Sequence RMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQ
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP)
SSSSS

B
STT


B


SSTTS



SS
SS

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence CGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRL
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) TTTT
SSSSGGG

TTT


SS

SGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence GIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKP
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) GSSSS
GGGGTTTT

SSS



STBGGG

B
SSSSSBS


 .........500.........510.........520.........530.........540.........550.........560
Sequence SRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALL
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)








S


TTS
SSSSS
TT


SS


SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence AVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLR
Predicted secondary structure






















































SS confidence





































































Known secondary structure (DSSP) TTS

TTS


SS



SS
TT

TTS


 .........640.........650.........660.........670.........680.........690.........700
Sequence LGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQ
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) T
T



TTTS


TTTTTS
S
 .........710.........720.........730.........740.........750.........760.........770
Sequence ILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETRSSFREGLT
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) T
TT
SSSS

S


SSS




SSS


 .........780.........790.........800.........810.........820.........830.........840
Sequence VLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRK
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TTT




S











SSSS



 .........850.........860.........870.........880.........890.........900.........910
Sequence RADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYG
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TT
BBSS

SSS
TT
B

TS





GGG


SSS


 .........920.........930.........940.........950.........960.........970.........980
Sequence YDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAAIDPHQ
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP) S
SSSSS


SS






SSS



S








 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALN
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)
TTT



TSSS
SSS
SS

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPA
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TTS
S







S
S
SSS
SSTT


STT


SS
 .........1130.........1140.........1150.
Sequence GTGSDFVRFTQVVDQKTLKAIEEARKEAVEA
Predicted secondary structure








SS confidence






























Known secondary structure (DSSP) TT

TTTS





TTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D