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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4wd9B_

Fold library idPDB HeaderMoleculeTitle
c4wd9B_PDB header: biosynthetic proteinChain: B: PDB Molecule: nisin biosynthesis protein nisb;PDBTitle: crystal structure of trna-dependent lantibiotic dehydratase nisb in2 complex with nisa leader peptide


Added to library: Sat Nov 1 08:26:41 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SFKAQPFLVRNTILCPNDKRSFTEYTQVIETVSKNKVFLEQLLLANPKLYDVMQKYNAGLLKKKRVKKLF
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Known secondary structure (DSSP)


B

SS
GGG



S
T

TTS
S
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ESIYKYYKRSYLRSTPFGLFSETSIGVFSKSSQYKLMGKTTKGIRLDTQWLIRLVHKMEVDFSKKLSFTR
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Known secondary structure (DSSP) S



BTTT
SS
B
B

S

GGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NNANYKFGDRVFQVYTINSSELEEVNIKYTNVYQIISEFCENDYQKYEDICETVTLCYGDEYRELSEQYL
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Known secondary structure (DSSP)
TTTTSS

SS
SS

TTT

TTT
GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence GSLIVNHYLISNLQKDLLSDFSWNTFLTKVEAIDEDKKYIIPLKKVQKFIQEYSEIEIGEGIEKLKEIYQ
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Known secondary structure (DSSP) TTSGGGBTTSSS


TT
TTS
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence EMSQILENDNYIQIDLISDSEINFDVKQKQQLEHLAEFLGNTTKSVRRTYLDDYKDKFIEKYGVDQEVQI
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Known secondary structure (DSSP)


S





SGGG

B
S
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence TELFDSTFGIGAPYNYNHPRNDFYESEPSTLYYSEEEREKYLSMYVEAVKNHNVINLDDLESHYQKMDLE
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Known secondary structure (DSSP) T
TTTS



TT

TT

SS






BSS
TT

GGGG

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence KKSELQGLELFLNLAKEYEKDIFILGDIVGNNNLGGASGRFSALSPELTSYHRTIVDSVERENENKEITS
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Known secondary structure (DSSP)






TTS
TTTTTTTTGGG
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence CEIVFLPENIRHANVMHTSIMRRKVLPFFTSTSHNEVLLTNIYIGIDEKEKFYARDISTQEVLKFYITSM
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Known secondary structure (DSSP)

SSGGGGGGS




SSSSB
SS
B

GGG
TT

TTT



SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence YNKTLFSNELRFLYEISLDDKFGNLPWELIYRDFDYIPRLVFDEIVISPAKWKIWGRDVNSKMTIRELIQ
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Known secondary structure (DSSP) S
TTSS
TTS
S
TT

TT
S

TT

GGG

SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence SKEIPKEFYIVNGDNKVYLSQKNPLDMEILESAIKKSSKRKDFIELQEYFEDENIINKGEKGRVADVVVP
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Known secondary structure (DSSP) TT

SSSS
TT
TT


B
SSSSSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence FIRAFIREKRVSVERREKLPFNEWLYLKLYISINRQNEFLLSYLPDIQKIVANLGGNLFFLRYTDPKPHI
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BTTT
TTT

SSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence RLRIKCSDLFLAYGSILEILKRSRKNRIMSTFDISIYDQEVERYGGFDTLELSEAIFCADSKIIPNLLTL
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Known secondary structure (DSSP)
SSTTS



TGGGSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence IKDTNNDWKVDDVSILVNYLYLKCFFQNDNKKILNFLNLVIFYDKNFKELKHAIKNLFLKMIAQDFELQK
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Known secondary structure (DSSP)

SS


TTS
STT




TTTT

 .........920.........930.........940.........950.........960..
Sequence VYSIIDSIIHVHNNRLIGIERDKEKLIYYTLQRLFVSEETKDFNLDLVSVSK
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Known secondary structure (DSSP) SS

SSTT


TT





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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