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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4w8iB_

Fold library idPDB HeaderMoleculeTitle
c4w8iB_PDB header: lyaseChain: B: PDB Molecule: probable sphingosine-1-phosphate lyase;PDBTitle: crystal structure of lpspl/lpp2128, legionella pneumophila2 sphingosine-1 phosphate lyase


Added to library: Sat Nov 8 08:21:50 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EEIPEEGLSPQDILSAFDVEKCHFDYAIHPKELTELLKEVYGATAINAXQAEVIRWCQNLFHGSKEGYGL
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Known secondary structure (DSSP)



SS


TT



SS







TTT


TT

TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LTHGGTTSIIEAXAAYVIRARAKGIDYPEIVVPETAHAAFKKAAELTGAILITVPVDKKTGAVNPNVXSS
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Known secondary structure (DSSP) SSST
SS
TTS
TTTT

B
TTT
SB
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence YITRNTAVXVGSAPSFXNGIHDPISELGQLAKKKNVPFHVDACLGGFLTAFLDTSSEPXDFRVPGVTSIS
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Known secondary structure (DSSP) T

TTSSBTTTTB


T

TTTTTS

SSS

STTSTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence ADLHKYGCCPKGTSVCLFSEDSPALSVYAALDGSTSGARVAEVYATLSYYGKNKYQEIAKSIIRLRNAIQ
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Known secondary structure (DSSP) S


TT

SS
TTT







 .........290.........300.........310.........320.........330.........340.........350
Sequence KELTALVEELTSEDIYVYGNPQWSILGFRSNTCIADELEKLQNPDGFHLCLTHVHTLVGSFETQFIKDLR
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Known secondary structure (DSSP) GGG


TTT

S


SS
S



SS



TTTT


STT
GGGT
 ....
Sequence EAVI
Predicted secondary structure
SS confidence



Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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