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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4w8fA_

Fold library idPDB HeaderMoleculeTitle
c4w8fA_PDB header: motor proteinChain: A: PDB Molecule: dynein heavy chain lysozyme chimera;PDBTitle: crystal structure of the dynein motor domain in the amppnp-bound state


Added to library: Sat Nov 15 09:28:22 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FVIEKSLNRIKKFWKEAQYEVIEHSSGLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESK
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Known secondary structure (DSSP)

SSS



SSS


GGG
SS
TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPN
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Known secondary structure (DSSP) TTS

TSS
SGGGGGSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIF
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Known secondary structure (DSSP) STTSGGGGGT
TTTSSSSGGGGGTTTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LEDFITGVRSVEGEVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQLKDGTDIEVVVSKYI
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Known secondary structure (DSSP)
SSTTS


SS

TT

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence FQAILLSAQVMWTELVEKCLQTNQFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVEYLHFNNVIGQ
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Known secondary structure (DSSP) T
TS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTD
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Known secondary structure (DSSP)
SSTS


S
S
GGGSTT






S






 .........430.........440.........450.........460.........470.........480.........490
Sequence SLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDQFNRLD
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Known secondary structure (DSSP) TT


TTS
STT


TTSS

T
TTTS

 .........500.........510.........520.........530.........540.........550.........560
Sequence EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSP
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Known secondary structure (DSSP) T
STT

TT


BTTBS



TT



 .........570.........580.........590.........600.........610.........620.........630
Sequence QSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTV
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Known secondary structure (DSSP)
TT
S
S


TT


STTTS
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence VESLKRVILPSLGDTDELVFKDELSKIFDSNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQA
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Known secondary structure (DSSP) TGGG

TTS


T




S
 .........710.........720.........730.........740.........750.........760.........770
Sequence LILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVND
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Known secondary structure (DSSP)

TTS




GGGS

TTT


TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence DITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITR
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Known secondary structure (DSSP)

SS

TTS
S


STT


TT




TTS

TTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence CGLLWFSTDVCSISSKIDHLLNKSYEALDNKLSMFELDKLKDLISDSFDMASLTNIFTCSNDLVHILGVR
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Known secondary structure (DSSP) S

S
SS
S


SS

TT


 .........920.........930.........940.........950.........960.........970.........980
Sequence TFNKLETAVQLAVHLISSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTYFGHD
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Known secondary structure (DSSP) TGGGSSSS
TTS
SS
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SQELSDYSTIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGP
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Known secondary structure (DSSP) S



SS



SSS













GGGTT
SS




TT


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEI
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Known secondary structure (DSSP) TTSS
SS

SS

TTTB

TTT
BSSSSTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence NLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL
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Known secondary structure (DSSP) T




TTS

STTTT
S

TTSTT




TT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence GYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGV
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Known secondary structure (DSSP)



SGGG
GGGGGGS
TTT
TT



 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence YTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGL
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Known secondary structure (DSSP) S



TGGG

SS


TT



SSTTT



S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LSLDFKEVNKTDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTIL
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Known secondary structure (DSSP) SSTT




SS







SSS


SSSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence TRFVAWLNGLKIVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANAD
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Known secondary structure (DSSP) TT





TT

TS


SSS
SSTSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence IPDLFQGEEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALF
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Known secondary structure (DSSP)
TTTS
TTT



SS
TTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence NRCIINWMGDWDTKTMSQVANNMVDVIPMEFTDFIVPEVNFTEPIQTIRDAVVNILIHFDRNFYQKMKVG
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Known secondary structure (DSSP)

S

SSTTS



S

SSS





SS

ST

S
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence VNPRSPGYFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNIFEMLRIDEGLRLKIYKDTEG
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Known secondary structure (DSSP) SS
S







T


TT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence YYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDA
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Known secondary structure (DSSP)
TTSSS
SSS

SSB

STTTS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence VRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYIS
Predicted secondary structure
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Known secondary structure (DSSP)
TTTT
TSSSTT

SS



 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKRLLGKFAVKYDVNY
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Known secondary structure (DSSP)
STTGGGGGTGGGG

TT



SS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence RFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNYYGNKTVLLSFLEE
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Known secondary structure (DSSP)


TT

S


SS

SS

SGGG
SSST
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence GFVKRLENAIRFGSVVIIQDGEFFDPIISRLISREFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGD
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Known secondary structure (DSSP) TT
S

SS

GGGTT


SS
TT

SS


TT

 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence IPIFLRSRVRLVHFVTNKESIETRIFDITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQ
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Known secondary structure (DSSP)

S



SSSS
TTTSSS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence GNMLENDELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGI
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Known secondary structure (DSSP)

SST
GGG

 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence SIGQFLSCFKRVFITRVDEILWLLYQEVYCQFSTALDKKFKMIMAMTMFCLYKFDIESEQYKEAVLTMIG
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Known secondary structure (DSSP)
TTT

GGGS
S
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence VLSESSDGVPKLTVDTNDDLRYLWDYVTTKSYISALNWFKNEFFVDEWNIADVVANSENNYFTMASERDV
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Known secondary structure (DSSP) SSS








SSSSTT
TT







S

TT
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence DGTFKLIELAKASKESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTYLHKHVEETKA
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Known secondary structure (DSSP)
STT



S

TGGGGTS
ST
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence AEEHEKFKMFMTCHLTGDKLPAPLLQRTDRVVYEDIPGILDTVKDLWGSQFFTGKISGVWSVYCTFLLSW
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Known secondary structure (DSSP) TTTS
S



SSS



TS





GGG

SS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence FHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDL
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Known secondary structure (DSSP) TTSSSSS




S
S
STTTTTGGG


 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence EVVAKLCAHVFCGSDNLQIVPGVRIPQPLLQQSEEEERARLTAILSNTIEPADSLSSWLQLPRESILDYE
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Known secondary structure (DSSP) TS

S


SBTTB





SS

S



SSTSSS
 .........2600........
Sequence RLQAKEVASSTEQLLQEM
Predicted secondary structure

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Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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