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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4v1oM_

Fold library idPDB HeaderMoleculeTitle
c4v1oM_PDB header: transcriptionChain: M: PDB Molecule: transcription initiation factor iib;PDBTitle: architecture of the rna polymerase ii-mediator core2 transcription initiation complex


Added to library: Sat Feb 7 08:39:46 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNN
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Known secondary structure (DSSP)


SSS

SS

GGGTTTT






TTTS
S

SS

SS






TTTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LSTRIGKGETTDMRFTKELNKAQGKNVKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLK
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SS

SSSS


TTTGGGGTTTT

TTTT
TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNIAQNLTYIPRFCSHLGLPMQVT
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Known secondary structure (DSSP) S

TTTSTTTTTTT



S


TTTTT


T

 .........220.........230.........240.........250.........260.........270.........280
Sequence TSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKL
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Known secondary structure (DSSP) T
SSS

SSS


T

TT
 .........290.........
Sequence VDPQLIANGVVSLDNLPGV
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Known secondary structure (DSSP) S
TT



TT

TTTS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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